miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23491 3' -61.4 NC_005259.1 + 27559 0.66 0.459663
Target:  5'- gCGGCCACCGAuccauaccGGcgGGaUgCCGUacuugucGCACCa -3'
miRNA:   3'- -GCCGGUGGCU--------CCa-CC-GgGGCA-------UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 30549 0.66 0.457802
Target:  5'- uGGCCACCGAGcGguuguugacgcccuUGGCCgCaGUaGCGCUg -3'
miRNA:   3'- gCCGGUGGCUC-C--------------ACCGGgG-CA-UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 58466 0.67 0.451321
Target:  5'- gCGGCCACCaGuGcGUGGCUgucgCCGacgACAUCg -3'
miRNA:   3'- -GCCGGUGG-CuC-CACCGG----GGCa--UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 46904 0.67 0.451321
Target:  5'- gCGcCCGCCGAGca-GUCCgCGUGCGCCg -3'
miRNA:   3'- -GCcGGUGGCUCcacCGGG-GCAUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 45488 0.67 0.44215
Target:  5'- uGGCCGCU--GGUGGCCuuGguCGCUg -3'
miRNA:   3'- gCCGGUGGcuCCACCGGggCauGUGG- -5'
23491 3' -61.4 NC_005259.1 + 19358 0.67 0.44215
Target:  5'- aGGaCGCCGGGaucaaGGCCCCGcugauCACCg -3'
miRNA:   3'- gCCgGUGGCUCca---CCGGGGCau---GUGG- -5'
23491 3' -61.4 NC_005259.1 + 5553 0.67 0.44215
Target:  5'- aGGCCGCgUGGGGUGGUgaCGgcgAgACCg -3'
miRNA:   3'- gCCGGUG-GCUCCACCGggGCa--UgUGG- -5'
23491 3' -61.4 NC_005259.1 + 7855 0.67 0.432186
Target:  5'- aCGGaCCgcGCCGAccccGGUGGCCCgaGUGCuuggacucgggcaGCCg -3'
miRNA:   3'- -GCC-GG--UGGCU----CCACCGGGg-CAUG-------------UGG- -5'
23491 3' -61.4 NC_005259.1 + 10104 0.67 0.431286
Target:  5'- aGGCCACCGAGcucaagaCCGUGCGCa -3'
miRNA:   3'- gCCGGUGGCUCcaccgg-GGCAUGUGg -5'
23491 3' -61.4 NC_005259.1 + 4476 0.67 0.424131
Target:  5'- aGGCCAUCGGcGGUGGaCCaUgGUGauCGCCa -3'
miRNA:   3'- gCCGGUGGCU-CCACC-GG-GgCAU--GUGG- -5'
23491 3' -61.4 NC_005259.1 + 26852 0.67 0.424131
Target:  5'- gGGCaggauGCCGAgcuguuucuuGGUGGCCCaGUcgagcACACCa -3'
miRNA:   3'- gCCGg----UGGCU----------CCACCGGGgCA-----UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 25261 0.67 0.424131
Target:  5'- --cCCACCGAGuacggcacgaUGGCCaCCGUGCACg -3'
miRNA:   3'- gccGGUGGCUCc---------ACCGG-GGCAUGUGg -5'
23491 3' -61.4 NC_005259.1 + 26046 0.67 0.424131
Target:  5'- aGcGCCGCCGGGuUGGCCaugCCGc-CGCCg -3'
miRNA:   3'- gC-CGGUGGCUCcACCGG---GGCauGUGG- -5'
23491 3' -61.4 NC_005259.1 + 16697 0.67 0.424131
Target:  5'- uGGgCACCGAGGUGaCCgCCGaGCAg- -3'
miRNA:   3'- gCCgGUGGCUCCACcGG-GGCaUGUgg -5'
23491 3' -61.4 NC_005259.1 + 8176 0.67 0.424131
Target:  5'- aGGCUACCcccGUGGCCugCCGUuuacGCGCCc -3'
miRNA:   3'- gCCGGUGGcucCACCGG--GGCA----UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 60406 0.67 0.416166
Target:  5'- aGGCCcaucucgaucuGCUcgGGGGUGGCCCaCGgggcggccacgcccgACACCu -3'
miRNA:   3'- gCCGG-----------UGG--CUCCACCGGG-GCa--------------UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 41404 0.67 0.415287
Target:  5'- gCGcGCCGCuCGGGGU-GCCCacgauGUGCACg -3'
miRNA:   3'- -GC-CGGUG-GCUCCAcCGGGg----CAUGUGg -5'
23491 3' -61.4 NC_005259.1 + 57975 0.67 0.415287
Target:  5'- aGGUCGCCGGGaucGUGaCCCCGgucgaGCCa -3'
miRNA:   3'- gCCGGUGGCUC---CACcGGGGCaug--UGG- -5'
23491 3' -61.4 NC_005259.1 + 58331 0.67 0.415287
Target:  5'- uCGGgCAgCGAgaucaggucGGUGGCCUCGgGCACg -3'
miRNA:   3'- -GCCgGUgGCU---------CCACCGGGGCaUGUGg -5'
23491 3' -61.4 NC_005259.1 + 28513 0.68 0.400516
Target:  5'- gCGGgaucgacCCGCCGAGGaaggauucaagaucaUGGCcacCCCGUucgACACCa -3'
miRNA:   3'- -GCC-------GGUGGCUCC---------------ACCG---GGGCA---UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.