miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23491 5' -56.7 NC_005259.1 + 20684 0.66 0.694818
Target:  5'- uGUGGUCgCAcGGcacgCGCUCGGUGGUCg -3'
miRNA:   3'- -UACCAG-GUuCCag--GUGAGCUACCGGg -5'
23491 5' -56.7 NC_005259.1 + 55035 0.66 0.684166
Target:  5'- -cGGgcugCCGAGGUgCuugcCUCGGUGGCa- -3'
miRNA:   3'- uaCCa---GGUUCCAgGu---GAGCUACCGgg -5'
23491 5' -56.7 NC_005259.1 + 67104 0.66 0.673466
Target:  5'- uUGGUCCGAGGUgUACU-----GCCCg -3'
miRNA:   3'- uACCAGGUUCCAgGUGAgcuacCGGG- -5'
23491 5' -56.7 NC_005259.1 + 41393 0.67 0.651964
Target:  5'- -cGGUacCCAuGGcgcgCCGCUCGggGuGCCCa -3'
miRNA:   3'- uaCCA--GGUuCCa---GGUGAGCuaC-CGGG- -5'
23491 5' -56.7 NC_005259.1 + 4467 0.67 0.619602
Target:  5'- uAUGGgCCAAGG-CCAUcggCGGUGGaCCa -3'
miRNA:   3'- -UACCaGGUUCCaGGUGa--GCUACCgGG- -5'
23491 5' -56.7 NC_005259.1 + 57034 0.67 0.598064
Target:  5'- -cGGU--GGGGUCgCACUCGucguaGGCCCa -3'
miRNA:   3'- uaCCAggUUCCAG-GUGAGCua---CCGGG- -5'
23491 5' -56.7 NC_005259.1 + 23210 0.67 0.598064
Target:  5'- uGUGGcCCAAGGacggguaccgUCCGCUCGAc-GCCa -3'
miRNA:   3'- -UACCaGGUUCC----------AGGUGAGCUacCGGg -5'
23491 5' -56.7 NC_005259.1 + 7929 0.68 0.591622
Target:  5'- uUGGUCUcguGGGccuUCUugcgcgcccacggcuGCUUGGUGGCCCa -3'
miRNA:   3'- uACCAGGu--UCC---AGG---------------UGAGCUACCGGG- -5'
23491 5' -56.7 NC_005259.1 + 42396 0.68 0.555387
Target:  5'- -cGGUCCAuGaGUCgucgUACUCGAUGGCg- -3'
miRNA:   3'- uaCCAGGUuC-CAG----GUGAGCUACCGgg -5'
23491 5' -56.7 NC_005259.1 + 16155 0.68 0.534371
Target:  5'- -aGGUUguGGuGUCCACUCccGUGGCCg -3'
miRNA:   3'- uaCCAGguUC-CAGGUGAGc-UACCGGg -5'
23491 5' -56.7 NC_005259.1 + 14483 0.7 0.473239
Target:  5'- cGUGGUCCGAuccgCUGCUCGGUG-CCCg -3'
miRNA:   3'- -UACCAGGUUcca-GGUGAGCUACcGGG- -5'
23491 5' -56.7 NC_005259.1 + 15139 0.7 0.463387
Target:  5'- -aGGUguaCGGGG-CCAcCUCGGUGGCCg -3'
miRNA:   3'- uaCCAg--GUUCCaGGU-GAGCUACCGGg -5'
23491 5' -56.7 NC_005259.1 + 32441 0.7 0.425101
Target:  5'- -cGGUCuCAGGGUCCAUcaUCu-UGGCCa -3'
miRNA:   3'- uaCCAG-GUUCCAGGUG--AGcuACCGGg -5'
23491 5' -56.7 NC_005259.1 + 53732 0.72 0.3537
Target:  5'- gAUGGUgaugucgCCGGGuGUCCACUCGGUGccGCCg -3'
miRNA:   3'- -UACCA-------GGUUC-CAGGUGAGCUAC--CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.