Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23493 | 5' | -60.7 | NC_005259.1 | + | 3497 | 0.66 | 0.545188 |
Target: 5'- gCCUCACGCGaccaUGUGCGCcgccGCGuucaACGGg -3' miRNA: 3'- gGGAGUGCGCgc--GCACGCG----CGC----UGUC- -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 66247 | 0.66 | 0.545188 |
Target: 5'- gCCaUCgACGCaGCGCGgcccGCGCcggGCGGCGGc -3' miRNA: 3'- gGG-AG-UGCG-CGCGCa---CGCG---CGCUGUC- -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 63994 | 0.66 | 0.543173 |
Target: 5'- uUCCUCGCGCGUGaCGgcauaccaccgcGCccgagGCGCGGCGa -3' miRNA: 3'- -GGGAGUGCGCGC-GCa-----------CG-----CGCGCUGUc -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 26643 | 0.66 | 0.54116 |
Target: 5'- gCCUgGCGUGCGCucggcagguucgGCGCacccgGCGGCAGc -3' miRNA: 3'- gGGAgUGCGCGCGca----------CGCG-----CGCUGUC- -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 20771 | 0.66 | 0.535137 |
Target: 5'- cCCCgccCAC-CGgGUG-GCGCGuCGACAGc -3' miRNA: 3'- -GGGa--GUGcGCgCGCaCGCGC-GCUGUC- -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 14223 | 0.66 | 0.525151 |
Target: 5'- aCCCg-GCGCGCGuCGUGCGUaucGgGcCGGg -3' miRNA: 3'- -GGGagUGCGCGC-GCACGCG---CgCuGUC- -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 44237 | 0.66 | 0.525151 |
Target: 5'- gCCCgcCGCGC-CGCccGCGCGCGAgAa -3' miRNA: 3'- -GGGa-GUGCGcGCGcaCGCGCGCUgUc -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 14321 | 0.66 | 0.524157 |
Target: 5'- gCCCUCGacgccgcCGCcCGCGUGCGgGCcgccGACGc -3' miRNA: 3'- -GGGAGU-------GCGcGCGCACGCgCG----CUGUc -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 31822 | 0.66 | 0.5054 |
Target: 5'- aCCCcacCGCGCcCGCGUcgaucuucucGCGCGUGACc- -3' miRNA: 3'- -GGGa--GUGCGcGCGCA----------CGCGCGCUGuc -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 25862 | 0.66 | 0.5054 |
Target: 5'- -aCUCGaugUGCGgGCGUGUGCcaGCGAaCAGg -3' miRNA: 3'- ggGAGU---GCGCgCGCACGCG--CGCU-GUC- -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 32869 | 0.66 | 0.499536 |
Target: 5'- aCCUCgACGCGCGCGgugaucgauucaccGgGgGCGAgGGu -3' miRNA: 3'- gGGAG-UGCGCGCGCa-------------CgCgCGCUgUC- -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 66349 | 0.66 | 0.495644 |
Target: 5'- gUCCUCAaagGaCGCaGCGaucUGCGCGUGGCAc -3' miRNA: 3'- -GGGAGUg--C-GCG-CGC---ACGCGCGCUGUc -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 25519 | 0.67 | 0.485974 |
Target: 5'- gCCCUCGaccguggcauCGCGUGgGUGC-UGgGACGGa -3' miRNA: 3'- -GGGAGU----------GCGCGCgCACGcGCgCUGUC- -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 29408 | 0.67 | 0.476395 |
Target: 5'- gCCUCgGCGaGCuCGUGCGCGCacACAGg -3' miRNA: 3'- gGGAG-UGCgCGcGCACGCGCGc-UGUC- -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 19192 | 0.67 | 0.457525 |
Target: 5'- gCCCUCGacaGCGaGCucgugGUGCGgGCGGCGa -3' miRNA: 3'- -GGGAGUg--CGCgCG-----CACGCgCGCUGUc -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 66017 | 0.69 | 0.33799 |
Target: 5'- aCCCUCGgggcCGCaCGUGuUGCGCGCGAg-- -3' miRNA: 3'- -GGGAGU----GCGcGCGC-ACGCGCGCUguc -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 59393 | 0.7 | 0.33037 |
Target: 5'- gCCUC-CGCGCGCGa--GCGUGACc- -3' miRNA: 3'- gGGAGuGCGCGCGCacgCGCGCUGuc -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 6506 | 0.71 | 0.254931 |
Target: 5'- gCCCacaUCGacCGaCGC-CGUGCGCGCGACAa -3' miRNA: 3'- -GGG---AGU--GC-GCGcGCACGCGCGCUGUc -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 12807 | 0.73 | 0.194219 |
Target: 5'- aCgCUguCGCGCGCacGCGCGCGugAGg -3' miRNA: 3'- -GgGAguGCGCGCGcaCGCGCGCugUC- -5' |
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23493 | 5' | -60.7 | NC_005259.1 | + | 51663 | 0.74 | 0.162502 |
Target: 5'- gCCgCGCGgGCGCGUcgggcacggGCGCGCGAUGGu -3' miRNA: 3'- gGGaGUGCgCGCGCA---------CGCGCGCUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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