miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23494 3' -55.5 NC_005259.1 + 42405 0.66 0.767154
Target:  5'- aGUCgUCgUACuCGAUgGCGGUgCGGCAg -3'
miRNA:   3'- gUAG-AG-AUGuGCUGgUGCCAgGCCGU- -5'
23494 3' -55.5 NC_005259.1 + 52125 0.66 0.767154
Target:  5'- aAUCUC--CGC-ACCGCcGUCCGGCAc -3'
miRNA:   3'- gUAGAGauGUGcUGGUGcCAGGCCGU- -5'
23494 3' -55.5 NC_005259.1 + 150 0.66 0.745972
Target:  5'- ----cCUACugGGCuCGCccggcggGGUCCGGCAc -3'
miRNA:   3'- guagaGAUGugCUG-GUG-------CCAGGCCGU- -5'
23494 3' -55.5 NC_005259.1 + 34114 0.67 0.736739
Target:  5'- aCGUgUCgccggGCGCGAgCAC-GUCCGGUAu -3'
miRNA:   3'- -GUAgAGa----UGUGCUgGUGcCAGGCCGU- -5'
23494 3' -55.5 NC_005259.1 + 4285 0.67 0.715937
Target:  5'- ----gCUGcCACGAgCACGGaCCGGCGg -3'
miRNA:   3'- guagaGAU-GUGCUgGUGCCaGGCCGU- -5'
23494 3' -55.5 NC_005259.1 + 64083 0.67 0.705412
Target:  5'- aCAcCUC-AC-CGACCACGGUCauGCAc -3'
miRNA:   3'- -GUaGAGaUGuGCUGGUGCCAGgcCGU- -5'
23494 3' -55.5 NC_005259.1 + 28333 0.67 0.705412
Target:  5'- cCGUC-CUugGCGgcgaaaucgagGCCACGGUgCUGGCu -3'
miRNA:   3'- -GUAGaGAugUGC-----------UGGUGCCA-GGCCGu -5'
23494 3' -55.5 NC_005259.1 + 60944 0.68 0.662729
Target:  5'- gAUCgUCUGCACcACaUGCGcGUCCGGCGg -3'
miRNA:   3'- gUAG-AGAUGUGcUG-GUGC-CAGGCCGU- -5'
23494 3' -55.5 NC_005259.1 + 39496 0.69 0.618523
Target:  5'- aUAUCgagCUugAUGGCCGCGccgcuggccaccaGUCCGGCc -3'
miRNA:   3'- -GUAGa--GAugUGCUGGUGC-------------CAGGCCGu -5'
23494 3' -55.5 NC_005259.1 + 2004 0.69 0.587333
Target:  5'- ----aCUACGCGGCCAuCGGguggcgcaCCGGCAc -3'
miRNA:   3'- guagaGAUGUGCUGGU-GCCa-------GGCCGU- -5'
23494 3' -55.5 NC_005259.1 + 24304 0.7 0.544846
Target:  5'- --gCUgCUGCGCGAUcuacccgaCAUGGUCCGGCc -3'
miRNA:   3'- guaGA-GAUGUGCUG--------GUGCCAGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.