Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23494 | 3' | -55.5 | NC_005259.1 | + | 52125 | 0.66 | 0.767154 |
Target: 5'- aAUCUC--CGC-ACCGCcGUCCGGCAc -3' miRNA: 3'- gUAGAGauGUGcUGGUGcCAGGCCGU- -5' |
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23494 | 3' | -55.5 | NC_005259.1 | + | 42405 | 0.66 | 0.767154 |
Target: 5'- aGUCgUCgUACuCGAUgGCGGUgCGGCAg -3' miRNA: 3'- gUAG-AG-AUGuGCUGgUGCCAgGCCGU- -5' |
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23494 | 3' | -55.5 | NC_005259.1 | + | 150 | 0.66 | 0.745972 |
Target: 5'- ----cCUACugGGCuCGCccggcggGGUCCGGCAc -3' miRNA: 3'- guagaGAUGugCUG-GUG-------CCAGGCCGU- -5' |
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23494 | 3' | -55.5 | NC_005259.1 | + | 34114 | 0.67 | 0.736739 |
Target: 5'- aCGUgUCgccggGCGCGAgCAC-GUCCGGUAu -3' miRNA: 3'- -GUAgAGa----UGUGCUgGUGcCAGGCCGU- -5' |
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23494 | 3' | -55.5 | NC_005259.1 | + | 4285 | 0.67 | 0.715937 |
Target: 5'- ----gCUGcCACGAgCACGGaCCGGCGg -3' miRNA: 3'- guagaGAU-GUGCUgGUGCCaGGCCGU- -5' |
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23494 | 3' | -55.5 | NC_005259.1 | + | 28333 | 0.67 | 0.705412 |
Target: 5'- cCGUC-CUugGCGgcgaaaucgagGCCACGGUgCUGGCu -3' miRNA: 3'- -GUAGaGAugUGC-----------UGGUGCCA-GGCCGu -5' |
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23494 | 3' | -55.5 | NC_005259.1 | + | 64083 | 0.67 | 0.705412 |
Target: 5'- aCAcCUC-AC-CGACCACGGUCauGCAc -3' miRNA: 3'- -GUaGAGaUGuGCUGGUGCCAGgcCGU- -5' |
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23494 | 3' | -55.5 | NC_005259.1 | + | 60944 | 0.68 | 0.662729 |
Target: 5'- gAUCgUCUGCACcACaUGCGcGUCCGGCGg -3' miRNA: 3'- gUAG-AGAUGUGcUG-GUGC-CAGGCCGU- -5' |
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23494 | 3' | -55.5 | NC_005259.1 | + | 39496 | 0.69 | 0.618523 |
Target: 5'- aUAUCgagCUugAUGGCCGCGccgcuggccaccaGUCCGGCc -3' miRNA: 3'- -GUAGa--GAugUGCUGGUGC-------------CAGGCCGu -5' |
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23494 | 3' | -55.5 | NC_005259.1 | + | 2004 | 0.69 | 0.587333 |
Target: 5'- ----aCUACGCGGCCAuCGGguggcgcaCCGGCAc -3' miRNA: 3'- guagaGAUGUGCUGGU-GCCa-------GGCCGU- -5' |
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23494 | 3' | -55.5 | NC_005259.1 | + | 24304 | 0.7 | 0.544846 |
Target: 5'- --gCUgCUGCGCGAUcuacccgaCAUGGUCCGGCc -3' miRNA: 3'- guaGA-GAUGUGCUG--------GUGCCAGGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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