miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23494 5' -52.4 NC_005259.1 + 22389 0.78 0.316053
Target:  5'- cGGUcgGCC-UCGGCGacGUGAUCGAGAAAGu -3'
miRNA:   3'- -CCA--CGGcAGCCGC--CACUAGUUCUUUC- -5'
23494 5' -52.4 NC_005259.1 + 66468 0.66 0.904183
Target:  5'- cGGUgacGCUGgUGGCGGUGGUCucGAu-- -3'
miRNA:   3'- -CCA---CGGCaGCCGCCACUAGuuCUuuc -5'
23494 5' -52.4 NC_005259.1 + 27384 0.67 0.882871
Target:  5'- cGGUGaCCGgCGGCGGUG-UCGGc---- -3'
miRNA:   3'- -CCAC-GGCaGCCGCCACuAGUUcuuuc -5'
23494 5' -52.4 NC_005259.1 + 60599 0.67 0.866575
Target:  5'- gGGUGCCGUCaucgagcagcacaGGCGGcgaGGUguGGAAc- -3'
miRNA:   3'- -CCACGGCAG-------------CCGCCa--CUAguUCUUuc -5'
23494 5' -52.4 NC_005259.1 + 4995 0.67 0.85926
Target:  5'- --gGCCGggcacuaCGGCaaGGUGGUCGAGAucGa -3'
miRNA:   3'- ccaCGGCa------GCCG--CCACUAGUUCUuuC- -5'
23494 5' -52.4 NC_005259.1 + 47191 0.68 0.842327
Target:  5'- cGGUGCCGUCGGCG------AAGAAc- -3'
miRNA:   3'- -CCACGGCAGCCGCcacuagUUCUUuc -5'
23494 5' -52.4 NC_005259.1 + 27170 0.68 0.842327
Target:  5'- -aUGCCGUCGGCGaUGAgCAGGc--- -3'
miRNA:   3'- ccACGGCAGCCGCcACUaGUUCuuuc -5'
23494 5' -52.4 NC_005259.1 + 7423 0.68 0.842327
Target:  5'- --cGCCGUCGGCGGUGccCGc----- -3'
miRNA:   3'- ccaCGGCAGCCGCCACuaGUucuuuc -5'
23494 5' -52.4 NC_005259.1 + 14808 0.68 0.842327
Target:  5'- --cGCCGggcugaugacCGGUgaGGUGAUCAAGAAAc -3'
miRNA:   3'- ccaCGGCa---------GCCG--CCACUAGUUCUUUc -5'
23494 5' -52.4 NC_005259.1 + 18742 0.68 0.833527
Target:  5'- cGGUaaGUCGUCGGUGGUGcUCGAc---- -3'
miRNA:   3'- -CCA--CGGCAGCCGCCACuAGUUcuuuc -5'
23494 5' -52.4 NC_005259.1 + 26974 0.68 0.815304
Target:  5'- cGUGCCGaacUCGGCGGUGu---AGAc-- -3'
miRNA:   3'- cCACGGC---AGCCGCCACuaguUCUuuc -5'
23494 5' -52.4 NC_005259.1 + 41641 0.69 0.796317
Target:  5'- cGGUGCCGgucugCGGgcgcuCGGUGAgCGGGAu-- -3'
miRNA:   3'- -CCACGGCa----GCC-----GCCACUaGUUCUuuc -5'
23494 5' -52.4 NC_005259.1 + 26811 0.69 0.786562
Target:  5'- cGGUugGCCGguacCGGCGGUGGUgcCGGGgcGGu -3'
miRNA:   3'- -CCA--CGGCa---GCCGCCACUA--GUUCuuUC- -5'
23494 5' -52.4 NC_005259.1 + 67211 0.69 0.766583
Target:  5'- --cGCUGUCGGCGG-GGUCGAu---- -3'
miRNA:   3'- ccaCGGCAGCCGCCaCUAGUUcuuuc -5'
23494 5' -52.4 NC_005259.1 + 28329 0.69 0.756382
Target:  5'- uGUGCCGUCcuuGGCGGcGAaaUCGAGGc-- -3'
miRNA:   3'- cCACGGCAG---CCGCCaCU--AGUUCUuuc -5'
23494 5' -52.4 NC_005259.1 + 28002 0.69 0.756382
Target:  5'- gGGUGCCGg-GGCGG-GGUCGccGGGGu- -3'
miRNA:   3'- -CCACGGCagCCGCCaCUAGU--UCUUuc -5'
23494 5' -52.4 NC_005259.1 + 31253 0.7 0.718693
Target:  5'- cGGUGCCGcCccacacgccgcaguaGGCGGUGG-CGAGAu-- -3'
miRNA:   3'- -CCACGGCaG---------------CCGCCACUaGUUCUuuc -5'
23494 5' -52.4 NC_005259.1 + 33319 0.77 0.365146
Target:  5'- --cGCCGUCGGCGGUcacgcggaaguGAUCGGGGucGa -3'
miRNA:   3'- ccaCGGCAGCCGCCA-----------CUAGUUCUuuC- -5'
23494 5' -52.4 NC_005259.1 + 34875 0.66 0.917053
Target:  5'- cGGUGCCGgacCGG-GGUGccUCGGGcAGGa -3'
miRNA:   3'- -CCACGGCa--GCCgCCACu-AGUUCuUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.