miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23495 3' -55.6 NC_005259.1 + 67415 0.66 0.708873
Target:  5'- -cCGacACCAUCGGGGUGCCgGgCUCa -3'
miRNA:   3'- aaGCacUGGUGGUUCCACGGgUaGAG- -5'
23495 3' -55.6 NC_005259.1 + 64339 0.68 0.586364
Target:  5'- cUCG-GACUGCCAcucguugcgggcGGUGCCCAUCa- -3'
miRNA:   3'- aAGCaCUGGUGGUu-----------CCACGGGUAGag -5'
23495 3' -55.6 NC_005259.1 + 62116 0.66 0.730195
Target:  5'- cUCGUaGucagUCACCGAGGUGaUCGUCUCg -3'
miRNA:   3'- aAGCA-Cu---GGUGGUUCCACgGGUAGAG- -5'
23495 3' -55.6 NC_005259.1 + 60384 0.66 0.68725
Target:  5'- aUCGccgGACagCGgCGAGGcgagGCCCAUCUCg -3'
miRNA:   3'- aAGCa--CUG--GUgGUUCCa---CGGGUAGAG- -5'
23495 3' -55.6 NC_005259.1 + 58665 0.66 0.698094
Target:  5'- -cCG-GugCACCGGGGUGCagcuuCCAUCg- -3'
miRNA:   3'- aaGCaCugGUGGUUCCACG-----GGUAGag -5'
23495 3' -55.6 NC_005259.1 + 57691 0.66 0.698094
Target:  5'- -cCGUGGCCagguuGCCGGGcuUGCCCGaCUCg -3'
miRNA:   3'- aaGCACUGG-----UGGUUCc-ACGGGUaGAG- -5'
23495 3' -55.6 NC_005259.1 + 56905 0.7 0.462205
Target:  5'- -gCGUGGCCGCCGcagcaGGcGUGCCCGcgUCg -3'
miRNA:   3'- aaGCACUGGUGGU-----UC-CACGGGUagAG- -5'
23495 3' -55.6 NC_005259.1 + 55028 0.71 0.442485
Target:  5'- cUCGgcacgGGCUGCCGAGGUGCUUGcCUCg -3'
miRNA:   3'- aAGCa----CUGGUGGUUCCACGGGUaGAG- -5'
23495 3' -55.6 NC_005259.1 + 53520 0.72 0.386328
Target:  5'- cUCGUGGCCAgCGGcacgggcucGGUGCCCGgugucggCUCg -3'
miRNA:   3'- aAGCACUGGUgGUU---------CCACGGGUa------GAG- -5'
23495 3' -55.6 NC_005259.1 + 52400 0.66 0.719577
Target:  5'- cUCG-GGCCAUCGAGGUgugggcGCUCGaCUCg -3'
miRNA:   3'- aAGCaCUGGUGGUUCCA------CGGGUaGAG- -5'
23495 3' -55.6 NC_005259.1 + 49541 0.66 0.740715
Target:  5'- -aCGUGGCCACCucaGUGCCgGgcugUUCg -3'
miRNA:   3'- aaGCACUGGUGGuucCACGGgUa---GAG- -5'
23495 3' -55.6 NC_005259.1 + 36132 0.66 0.698094
Target:  5'- gUUG-GGCCGCCGGGcUGUCCGUCg- -3'
miRNA:   3'- aAGCaCUGGUGGUUCcACGGGUAGag -5'
23495 3' -55.6 NC_005259.1 + 35227 0.67 0.665416
Target:  5'- -aCGUGACCGCCAcGcGUGCa-GUCUg -3'
miRNA:   3'- aaGCACUGGUGGUuC-CACGggUAGAg -5'
23495 3' -55.6 NC_005259.1 + 23153 0.66 0.730195
Target:  5'- -gCGaGACCACCcucGGUGUCCcgUUCa -3'
miRNA:   3'- aaGCaCUGGUGGuu-CCACGGGuaGAG- -5'
23495 3' -55.6 NC_005259.1 + 21963 0.69 0.52393
Target:  5'- -gCGUGAcCCGCguGGGUGUCguUCUCc -3'
miRNA:   3'- aaGCACU-GGUGguUCCACGGguAGAG- -5'
23495 3' -55.6 NC_005259.1 + 16415 0.76 0.223452
Target:  5'- ----aGcCCACCGAGGUGCCCGUCg- -3'
miRNA:   3'- aagcaCuGGUGGUUCCACGGGUAGag -5'
23495 3' -55.6 NC_005259.1 + 16173 0.68 0.599493
Target:  5'- -cCGUGGCCGCCGAGGUccaagagaucauGUCCAc--- -3'
miRNA:   3'- aaGCACUGGUGGUUCCA------------CGGGUagag -5'
23495 3' -55.6 NC_005259.1 + 15422 0.68 0.577641
Target:  5'- -gCGUG-CCACCAAG--GCCgAUCUCg -3'
miRNA:   3'- aaGCACuGGUGGUUCcaCGGgUAGAG- -5'
23495 3' -55.6 NC_005259.1 + 11450 0.66 0.698094
Target:  5'- cUCGcuGCCGCC--GGUGCCUaucGUCUCg -3'
miRNA:   3'- aAGCacUGGUGGuuCCACGGG---UAGAG- -5'
23495 3' -55.6 NC_005259.1 + 5704 0.67 0.676354
Target:  5'- cUCGUG-CCGCCAAGGccaGCgCCGgacggcggccauUCUCg -3'
miRNA:   3'- aAGCACuGGUGGUUCCa--CG-GGU------------AGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.