miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23495 5' -57.9 NC_005259.1 + 60928 0.76 0.191959
Target:  5'- -uGAGCUCGGCCUUGGUGAucGUcugcACCa- -3'
miRNA:   3'- guCUCGAGCCGGAGCCACU--CA----UGGcc -5'
23495 5' -57.9 NC_005259.1 + 61926 0.74 0.241202
Target:  5'- uCGGcAGCUCGGUcuCUCGcGcGGGUGCCGGg -3'
miRNA:   3'- -GUC-UCGAGCCG--GAGC-CaCUCAUGGCC- -5'
23495 5' -57.9 NC_005259.1 + 58233 0.74 0.259817
Target:  5'- -cGAGCUCGGgCUCGGUGaAGaACCa- -3'
miRNA:   3'- guCUCGAGCCgGAGCCAC-UCaUGGcc -5'
23495 5' -57.9 NC_005259.1 + 67390 0.71 0.370538
Target:  5'- ---cGCUUGGCCUCGG-GGGUGuCaCGGg -3'
miRNA:   3'- gucuCGAGCCGGAGCCaCUCAU-G-GCC- -5'
23495 5' -57.9 NC_005259.1 + 27042 0.71 0.387533
Target:  5'- -uGAGCUUGGCCUUGGccUGAGcgaCGGu -3'
miRNA:   3'- guCUCGAGCCGGAGCC--ACUCaugGCC- -5'
23495 5' -57.9 NC_005259.1 + 36916 0.7 0.441482
Target:  5'- aCGGGGauaUCGuGCCgaCGGUGAGUguugcugucACCGGg -3'
miRNA:   3'- -GUCUCg--AGC-CGGa-GCCACUCA---------UGGCC- -5'
23495 5' -57.9 NC_005259.1 + 8789 0.69 0.46039
Target:  5'- -uGAGCUCGGCCcgcUUGGcGAGgaucuucucgcGCCGGg -3'
miRNA:   3'- guCUCGAGCCGG---AGCCaCUCa----------UGGCC- -5'
23495 5' -57.9 NC_005259.1 + 59132 0.68 0.550174
Target:  5'- gCAGAGCgUCGaG-CUCGGcagcGGUGCCGGg -3'
miRNA:   3'- -GUCUCG-AGC-CgGAGCCac--UCAUGGCC- -5'
23495 5' -57.9 NC_005259.1 + 13406 0.67 0.581379
Target:  5'- ---cGCUCGGCCUuccUGGccgGGGUcgccGCCGGg -3'
miRNA:   3'- gucuCGAGCCGGA---GCCa--CUCA----UGGCC- -5'
23495 5' -57.9 NC_005259.1 + 25507 0.67 0.601334
Target:  5'- gAGGGCaaaaaGGCCcucgaccguggcaUCGcGUGGGUGCUGGg -3'
miRNA:   3'- gUCUCGag---CCGG-------------AGC-CACUCAUGGCC- -5'
23495 5' -57.9 NC_005259.1 + 26797 0.66 0.655174
Target:  5'- cCAGcGCcgccgcccggUUGGCCgguaccggCGGUG-GUGCCGGg -3'
miRNA:   3'- -GUCuCG----------AGCCGGa-------GCCACuCAUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.