miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23496 3' -53.5 NC_005259.1 + 37666 0.66 0.867376
Target:  5'- cGC-CGGU---GCCGCCACGGUugGUGUa -3'
miRNA:   3'- -CGaGCUAcacCGGCGGUGCCA--UAUAg -5'
23496 3' -53.5 NC_005259.1 + 35774 0.66 0.867376
Target:  5'- ------cGUGGUCGaCCACGGgAUGUCg -3'
miRNA:   3'- cgagcuaCACCGGC-GGUGCCaUAUAG- -5'
23496 3' -53.5 NC_005259.1 + 18759 0.66 0.85926
Target:  5'- uGCUCGAcaUGGCCuGCCacaucGCGGUGg--- -3'
miRNA:   3'- -CGAGCUacACCGG-CGG-----UGCCAUauag -5'
23496 3' -53.5 NC_005259.1 + 59871 0.66 0.850907
Target:  5'- gGCUCGuUGUGGCCGaaaCCGgGGg----- -3'
miRNA:   3'- -CGAGCuACACCGGC---GGUgCCauauag -5'
23496 3' -53.5 NC_005259.1 + 19704 0.66 0.850907
Target:  5'- gGCUCGcacguUGGCUGCCGCcgaGGUG-AUCg -3'
miRNA:   3'- -CGAGCuac--ACCGGCGGUG---CCAUaUAG- -5'
23496 3' -53.5 NC_005259.1 + 32983 0.66 0.842327
Target:  5'- uGC-CGAUGccgaggGuGCCGCCACGcccgAUGUCg -3'
miRNA:   3'- -CGaGCUACa-----C-CGGCGGUGCca--UAUAG- -5'
23496 3' -53.5 NC_005259.1 + 43949 0.66 0.833527
Target:  5'- aGCgucggCGAUGggcggGGCCGCCgccugaccgaggGCGGUGc--- -3'
miRNA:   3'- -CGa----GCUACa----CCGGCGG------------UGCCAUauag -5'
23496 3' -53.5 NC_005259.1 + 45522 0.67 0.824517
Target:  5'- cGC-CGGUGuUGGCCGCCGUGGc----- -3'
miRNA:   3'- -CGaGCUAC-ACCGGCGGUGCCauauag -5'
23496 3' -53.5 NC_005259.1 + 27482 0.67 0.824517
Target:  5'- gGgUCGGUGUGGCCaccgccccacgcGCCGaGGUcgacGUGUCc -3'
miRNA:   3'- -CgAGCUACACCGG------------CGGUgCCA----UAUAG- -5'
23496 3' -53.5 NC_005259.1 + 50961 0.68 0.776646
Target:  5'- gGCUCGc-GUGGCUGUCccacgcggcgaGCGGUGUcgaGUCa -3'
miRNA:   3'- -CGAGCuaCACCGGCGG-----------UGCCAUA---UAG- -5'
23496 3' -53.5 NC_005259.1 + 55819 0.69 0.692921
Target:  5'- cCUCGggGUaGGCCGCCGCGuccucgacgcGUGUGg- -3'
miRNA:   3'- cGAGCuaCA-CCGGCGGUGC----------CAUAUag -5'
23496 3' -53.5 NC_005259.1 + 49086 0.69 0.682074
Target:  5'- cGCUCGAgggUGUcauGGCCGCCcgcCGGg--AUCu -3'
miRNA:   3'- -CGAGCU---ACA---CCGGCGGu--GCCauaUAG- -5'
23496 3' -53.5 NC_005259.1 + 18717 0.7 0.66025
Target:  5'- cCUCGAUcaucgGGCCGCCcggcauCGGUAaGUCg -3'
miRNA:   3'- cGAGCUAca---CCGGCGGu-----GCCAUaUAG- -5'
23496 3' -53.5 NC_005259.1 + 23634 0.7 0.626246
Target:  5'- gGCUCGGUGUGGuuucggcCCGCCgACGGc----- -3'
miRNA:   3'- -CGAGCUACACC-------GGCGG-UGCCauauag -5'
23496 3' -53.5 NC_005259.1 + 20052 0.71 0.594474
Target:  5'- cGCUgCGAUGU--CCGCUGCGGUGgcgGUCg -3'
miRNA:   3'- -CGA-GCUACAccGGCGGUGCCAUa--UAG- -5'
23496 3' -53.5 NC_005259.1 + 29928 0.72 0.498417
Target:  5'- -aUCGAcgcGUGGCCGCCACGcGgcccgGUCg -3'
miRNA:   3'- cgAGCUa--CACCGGCGGUGC-Caua--UAG- -5'
23496 3' -53.5 NC_005259.1 + 19853 0.73 0.448078
Target:  5'- cGCUCGGUGUGGCgcucgCGCCcgcCGGg--AUCg -3'
miRNA:   3'- -CGAGCUACACCG-----GCGGu--GCCauaUAG- -5'
23496 3' -53.5 NC_005259.1 + 8692 0.74 0.400683
Target:  5'- cCUCGAUGUcgcugucgaGGUCGUCGCGGUcaagcGUGUCg -3'
miRNA:   3'- cGAGCUACA---------CCGGCGGUGCCA-----UAUAG- -5'
23496 3' -53.5 NC_005259.1 + 11616 0.88 0.059674
Target:  5'- cGCUCGAUGUGGCCGUUugGGguuaaccaugUAUAUCa -3'
miRNA:   3'- -CGAGCUACACCGGCGGugCC----------AUAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.