miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23496 5' -51.6 NC_005259.1 + 11635 0.79 0.279096
Target:  5'- gGGUUAACCauguauaUCAAgauauaccgugGCGGCCACAUCGAg -3'
miRNA:   3'- aCCAAUUGG-------GGUU-----------UGCCGGUGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 13222 0.76 0.412947
Target:  5'- cGGUgGGCCUCGAcCGGCCACcgUGAg -3'
miRNA:   3'- aCCAaUUGGGGUUuGCCGGUGuaGCU- -5'
23496 5' -51.6 NC_005259.1 + 62544 0.75 0.441918
Target:  5'- cGGUccgagagaUAGCCUCAccgggcAGCGGCCACAUCa- -3'
miRNA:   3'- aCCA--------AUUGGGGU------UUGCCGGUGUAGcu -5'
23496 5' -51.6 NC_005259.1 + 60425 0.73 0.589701
Target:  5'- cGGgggUGGCCCacgGGGCGGCCACGcccgacaccUCGAu -3'
miRNA:   3'- aCCa--AUUGGGg--UUUGCCGGUGU---------AGCU- -5'
23496 5' -51.6 NC_005259.1 + 22116 0.72 0.623002
Target:  5'- aGGUcGACCCCucgaucccgcGCaGCCACGUCGGc -3'
miRNA:   3'- aCCAaUUGGGGuu--------UGcCGGUGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 51163 0.71 0.700497
Target:  5'- gGGUUGACCgu-GGCGaGCCACAgaUCGAu -3'
miRNA:   3'- aCCAAUUGGgguUUGC-CGGUGU--AGCU- -5'
23496 5' -51.6 NC_005259.1 + 15555 0.71 0.700497
Target:  5'- cGGUgccACCCuCAggUGGCCACccUCGGg -3'
miRNA:   3'- aCCAau-UGGG-GUuuGCCGGUGu-AGCU- -5'
23496 5' -51.6 NC_005259.1 + 68576 0.71 0.711387
Target:  5'- aGGUgGACCUCGuauccGGCGGCCACcgCa- -3'
miRNA:   3'- aCCAaUUGGGGU-----UUGCCGGUGuaGcu -5'
23496 5' -51.6 NC_005259.1 + 64833 0.7 0.722196
Target:  5'- gUGGUgacgGACCCUGcuggcGAUGGCCACccugAUCGGu -3'
miRNA:   3'- -ACCAa---UUGGGGU-----UUGCCGGUG----UAGCU- -5'
23496 5' -51.6 NC_005259.1 + 19389 0.7 0.754029
Target:  5'- ----cGGCCCC-AACGGCaGCGUCGAc -3'
miRNA:   3'- accaaUUGGGGuUUGCCGgUGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 42640 0.7 0.754029
Target:  5'- aGGcaccucGGCCCCGAuguggGCGGCCACG-CGGc -3'
miRNA:   3'- aCCaa----UUGGGGUU-----UGCCGGUGUaGCU- -5'
23496 5' -51.6 NC_005259.1 + 46636 0.69 0.794638
Target:  5'- cUGGUcAGCUCCA--UGGCCACA-CGGc -3'
miRNA:   3'- -ACCAaUUGGGGUuuGCCGGUGUaGCU- -5'
23496 5' -51.6 NC_005259.1 + 60265 0.69 0.794638
Target:  5'- aGGcUGGCCaccagcgcugCCGGGCGGCCAuCGUCGu -3'
miRNA:   3'- aCCaAUUGG----------GGUUUGCCGGU-GUAGCu -5'
23496 5' -51.6 NC_005259.1 + 35502 0.69 0.794638
Target:  5'- gGGUUGGCCCCGuuGCcGCCGCcgCc- -3'
miRNA:   3'- aCCAAUUGGGGUu-UGcCGGUGuaGcu -5'
23496 5' -51.6 NC_005259.1 + 53663 0.69 0.804385
Target:  5'- cGGgccgaGGCCCCAcGCGGgCAUcgCGAu -3'
miRNA:   3'- aCCaa---UUGGGGUuUGCCgGUGuaGCU- -5'
23496 5' -51.6 NC_005259.1 + 56035 0.68 0.838762
Target:  5'- cGGgacuuCCUCGGGCGGCUgcggguacuugaugGCGUCGAg -3'
miRNA:   3'- aCCaauu-GGGGUUUGCCGG--------------UGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 8009 0.68 0.850145
Target:  5'- cGG-UAGCCCCcgccccGGCGGCCACcccguuucgCGAa -3'
miRNA:   3'- aCCaAUUGGGGu-----UUGCCGGUGua-------GCU- -5'
23496 5' -51.6 NC_005259.1 + 61041 0.68 0.866064
Target:  5'- aGGUcGACCgaCGGGCGGCUcaccuugugccggGCAUCGGc -3'
miRNA:   3'- aCCAaUUGGg-GUUUGCCGG-------------UGUAGCU- -5'
23496 5' -51.6 NC_005259.1 + 66580 0.68 0.866878
Target:  5'- gGGUUAuuUCCCGAugGaucGCCGCAUCc- -3'
miRNA:   3'- aCCAAUu-GGGGUUugC---CGGUGUAGcu -5'
23496 5' -51.6 NC_005259.1 + 43187 0.68 0.866878
Target:  5'- cGGUaccGACCUC-GGCGGCgAUGUCGAc -3'
miRNA:   3'- aCCAa--UUGGGGuUUGCCGgUGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.