miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23497 3' -52.5 NC_005259.1 + 44860 0.66 0.917053
Target:  5'- -aGUCgCUCAGACCGgcGGcGAGAuccgACGCGc -3'
miRNA:   3'- ggCAG-GAGUCUGGUa-CC-UUCU----UGCGU- -5'
23497 3' -52.5 NC_005259.1 + 47028 0.66 0.917053
Target:  5'- aCCGccUCCagCAGGCCggGGAucuGCGCGa -3'
miRNA:   3'- -GGC--AGGa-GUCUGGuaCCUucuUGCGU- -5'
23497 3' -52.5 NC_005259.1 + 51113 0.66 0.916436
Target:  5'- uCUGUCCggCAGGCCAUcagaucaccgucGGGGcggccauGAGCGCGu -3'
miRNA:   3'- -GGCAGGa-GUCUGGUA------------CCUU-------CUUGCGU- -5'
23497 3' -52.5 NC_005259.1 + 12171 0.66 0.896645
Target:  5'- aCCGcCCUCggucgaaccugccGGACCGUGGucguguAGAgaugcaccgGCGCAc -3'
miRNA:   3'- -GGCaGGAG-------------UCUGGUACCu-----UCU---------UGCGU- -5'
23497 3' -52.5 NC_005259.1 + 1714 0.66 0.890238
Target:  5'- gCCG-CCUC--GCCGaGGuGGAACGCAa -3'
miRNA:   3'- -GGCaGGAGucUGGUaCCuUCUUGCGU- -5'
23497 3' -52.5 NC_005259.1 + 3064 0.66 0.889513
Target:  5'- aCCGUCgaCGGGCCGaGGccgacaaGAGAgccGCGCAg -3'
miRNA:   3'- -GGCAGgaGUCUGGUaCC-------UUCU---UGCGU- -5'
23497 3' -52.5 NC_005259.1 + 22055 0.67 0.853437
Target:  5'- cCCGUCCUCAuGgucgcucACCGUGGugagcucaucgaccAGAugGCGg -3'
miRNA:   3'- -GGCAGGAGU-C-------UGGUACCu-------------UCUugCGU- -5'
23497 3' -52.5 NC_005259.1 + 5928 0.68 0.833527
Target:  5'- aCCGUC----GACCGUaaGGGAGAACGCu -3'
miRNA:   3'- -GGCAGgaguCUGGUA--CCUUCUUGCGu -5'
23497 3' -52.5 NC_005259.1 + 67305 0.68 0.814373
Target:  5'- cCCGcCCUCGGGguugcgcggugauCCcUGGuAGAGCGCGu -3'
miRNA:   3'- -GGCaGGAGUCU-------------GGuACCuUCUUGCGU- -5'
23497 3' -52.5 NC_005259.1 + 52395 0.68 0.805901
Target:  5'- cCUG-CCUCGGGCCAUcgaGGuguGGGCGCu -3'
miRNA:   3'- -GGCaGGAGUCUGGUA---CCuu-CUUGCGu -5'
23497 3' -52.5 NC_005259.1 + 68282 0.68 0.796317
Target:  5'- aCCGUCCUCGccCCAUacaucGGGAucGGGCGCGu -3'
miRNA:   3'- -GGCAGGAGUcuGGUA-----CCUU--CUUGCGU- -5'
23497 3' -52.5 NC_005259.1 + 11233 0.69 0.776646
Target:  5'- -aGUCCUCGGGCUcgGGcAucGCGCGc -3'
miRNA:   3'- ggCAGGAGUCUGGuaCCuUcuUGCGU- -5'
23497 3' -52.5 NC_005259.1 + 9714 0.72 0.583569
Target:  5'- aCCGUCCUCGGGCCGgucGAGcuCGCc -3'
miRNA:   3'- -GGCAGGAGUCUGGUaccUUCuuGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.