miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23497 5' -61.6 NC_005259.1 + 32877 0.66 0.482357
Target:  5'- gCGCGCGGUGaUCGAuucaCCGGGGGCg- -3'
miRNA:   3'- -GCGCGCUACgGGCUcg--GGCUCCUGac -5'
23497 5' -61.6 NC_005259.1 + 20650 0.66 0.482357
Target:  5'- aCGUuCGGcgGCaCCGGGgCCGAGGACg- -3'
miRNA:   3'- -GCGcGCUa-CG-GGCUCgGGCUCCUGac -5'
23497 5' -61.6 NC_005259.1 + 20512 0.66 0.46334
Target:  5'- gGCGaCGGUGuCCCGAGCaCGGGuGcGCUGc -3'
miRNA:   3'- gCGC-GCUAC-GGGCUCGgGCUC-C-UGAC- -5'
23497 5' -61.6 NC_005259.1 + 19547 0.66 0.435573
Target:  5'- cCGaCGCGuAUGCCCGcAGCCgucGGGACa- -3'
miRNA:   3'- -GC-GCGC-UACGGGC-UCGGgc-UCCUGac -5'
23497 5' -61.6 NC_005259.1 + 7182 0.67 0.426532
Target:  5'- cCG-GCGAgUGCCCG-GCCUGcGGACg- -3'
miRNA:   3'- -GCgCGCU-ACGGGCuCGGGCuCCUGac -5'
23497 5' -61.6 NC_005259.1 + 33140 0.67 0.425634
Target:  5'- gCGCGUGAUcuugccguagaccGCCUGAgGCaCCGGGGugUc -3'
miRNA:   3'- -GCGCGCUA-------------CGGGCU-CG-GGCUCCugAc -5'
23497 5' -61.6 NC_005259.1 + 52538 0.67 0.391517
Target:  5'- cCGCGCcccaagauugGAUGUgCGAGCCCGAcauggucgaccGGACc- -3'
miRNA:   3'- -GCGCG----------CUACGgGCUCGGGCU-----------CCUGac -5'
23497 5' -61.6 NC_005259.1 + 4933 0.68 0.374727
Target:  5'- cCGCGUGAUcGUCCG-GCCCGAaaacGGCUa -3'
miRNA:   3'- -GCGCGCUA-CGGGCuCGGGCUc---CUGAc -5'
23497 5' -61.6 NC_005259.1 + 66923 0.68 0.366516
Target:  5'- gCGCGCGGUGCUCGA--CCGGGGugaGCg- -3'
miRNA:   3'- -GCGCGCUACGGGCUcgGGCUCC---UGac -5'
23497 5' -61.6 NC_005259.1 + 4710 0.68 0.342636
Target:  5'- gGUGCGAUgaccgcGCCCGAgaaaGCCCGcaAGGACc- -3'
miRNA:   3'- gCGCGCUA------CGGGCU----CGGGC--UCCUGac -5'
23497 5' -61.6 NC_005259.1 + 68712 0.7 0.277872
Target:  5'- gCGCGuCGGUGCCCGAGaaCUGGGGuCg- -3'
miRNA:   3'- -GCGC-GCUACGGGCUCg-GGCUCCuGac -5'
23497 5' -61.6 NC_005259.1 + 16499 0.7 0.277872
Target:  5'- cCGCGCGcAUGgCCGAGagCGAGGcGCUGc -3'
miRNA:   3'- -GCGCGC-UACgGGCUCggGCUCC-UGAC- -5'
23497 5' -61.6 NC_005259.1 + 52388 0.7 0.271311
Target:  5'- uGCGCagccUGCCuCGGGCCauCGAGGugUGg -3'
miRNA:   3'- gCGCGcu--ACGG-GCUCGG--GCUCCugAC- -5'
23497 5' -61.6 NC_005259.1 + 18657 0.7 0.252375
Target:  5'- gGCGCGAUaugccgccGCCCGAGUacgucaUCGAGGGuCUGc -3'
miRNA:   3'- gCGCGCUA--------CGGGCUCG------GGCUCCU-GAC- -5'
23497 5' -61.6 NC_005259.1 + 7425 0.71 0.234541
Target:  5'- cCGUcgGCGGUGCCCGcgccgcauggcAGCgCCGAGGAUg- -3'
miRNA:   3'- -GCG--CGCUACGGGC-----------UCG-GGCUCCUGac -5'
23497 5' -61.6 NC_005259.1 + 25947 0.71 0.228836
Target:  5'- aCGC-CGGUGCCCG-GCCCGccGACg- -3'
miRNA:   3'- -GCGcGCUACGGGCuCGGGCucCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.