miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23499 3' -55.3 NC_005259.1 + 50678 0.66 0.81346
Target:  5'- cGCGuCGGUGCCGa--CGAGGcGCugcucGUCGu -3'
miRNA:   3'- -CGC-GCCACGGCaacGCUCC-UGu----UAGC- -5'
23499 3' -55.3 NC_005259.1 + 36531 0.66 0.765616
Target:  5'- cGCGCGGUGUgacacGCGGGGugAucugCGg -3'
miRNA:   3'- -CGCGCCACGgcaa-CGCUCCugUua--GC- -5'
23499 3' -55.3 NC_005259.1 + 54032 0.67 0.735255
Target:  5'- gGCGCGGUGCgGUcUGCGAa-GCAuUCc -3'
miRNA:   3'- -CGCGCCACGgCA-ACGCUccUGUuAGc -5'
23499 3' -55.3 NC_005259.1 + 27392 0.67 0.724923
Target:  5'- gGCgGCGGUGUCGgcaGCGGcGGCAGcUCGg -3'
miRNA:   3'- -CG-CGCCACGGCaa-CGCUcCUGUU-AGC- -5'
23499 3' -55.3 NC_005259.1 + 37761 0.67 0.724923
Target:  5'- aGCGCGGUgGCCccUGCGGGcACGAgCGc -3'
miRNA:   3'- -CGCGCCA-CGGcaACGCUCcUGUUaGC- -5'
23499 3' -55.3 NC_005259.1 + 45124 0.68 0.69344
Target:  5'- -aGUGGUGCCGa--CGAGGucgGCAAUCu -3'
miRNA:   3'- cgCGCCACGGCaacGCUCC---UGUUAGc -5'
23499 3' -55.3 NC_005259.1 + 9030 0.68 0.682819
Target:  5'- aCGCGGUGCuCGaucaugUGCG-GGGCGGUa- -3'
miRNA:   3'- cGCGCCACG-GCa-----ACGCuCCUGUUAgc -5'
23499 3' -55.3 NC_005259.1 + 10461 0.68 0.650718
Target:  5'- -gGCGGUGUCc-UGCGcagcGGGACGAUCu -3'
miRNA:   3'- cgCGCCACGGcaACGC----UCCUGUUAGc -5'
23499 3' -55.3 NC_005259.1 + 19208 0.68 0.650718
Target:  5'- uCGUGGUGCgGgcgGCGAcgugGGACAccgaGUCGg -3'
miRNA:   3'- cGCGCCACGgCaa-CGCU----CCUGU----UAGC- -5'
23499 3' -55.3 NC_005259.1 + 17604 0.69 0.62922
Target:  5'- gGCGCGaUGaCGUggggcgGCGAGGACGGUUu -3'
miRNA:   3'- -CGCGCcACgGCAa-----CGCUCCUGUUAGc -5'
23499 3' -55.3 NC_005259.1 + 26826 0.69 0.628145
Target:  5'- gGCgGUGGUGCCGggGCGGucugcucGGGCAGg-- -3'
miRNA:   3'- -CG-CGCCACGGCaaCGCU-------CCUGUUagc -5'
23499 3' -55.3 NC_005259.1 + 41639 0.69 0.607731
Target:  5'- -gGCGGUGCCGgucUGCGGGcGC--UCGg -3'
miRNA:   3'- cgCGCCACGGCa--ACGCUCcUGuuAGC- -5'
23499 3' -55.3 NC_005259.1 + 66924 0.69 0.607731
Target:  5'- cGCGCGGUGCuCGac-CGGGGugAG-CGg -3'
miRNA:   3'- -CGCGCCACG-GCaacGCUCCugUUaGC- -5'
23499 3' -55.3 NC_005259.1 + 27997 0.72 0.453175
Target:  5'- gGUGCgGGUGCCGggGCGGGGucgccgggguuGCGcgCGu -3'
miRNA:   3'- -CGCG-CCACGGCaaCGCUCC-----------UGUuaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.