Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
235 | 5' | -65.9 | AC_000008.1 | + | 29483 | 0.66 | 0.165256 |
Target: 5'- uUGgCGCGUGCACCUgguGCCCGaCGaGCgCAc -3' miRNA: 3'- -ACgGCGCGUGUGGGu--CGGGC-GC-CG-GU- -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 26816 | 0.66 | 0.169244 |
Target: 5'- cGCUGCGUcugGCGCCCAacgaacccguaucGaCCCGCGaGCUu -3' miRNA: 3'- aCGGCGCG---UGUGGGU-------------C-GGGCGC-CGGu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 28058 | 0.66 | 0.169692 |
Target: 5'- cUGCCGCGCGagACCUAGCC-GCGaaCCu -3' miRNA: 3'- -ACGGCGCGUg-UGGGUCGGgCGCc-GGu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 26143 | 0.66 | 0.169692 |
Target: 5'- cGCCGCcCGCugCC-GCCCGCcacGGUg- -3' miRNA: 3'- aCGGCGcGUGugGGuCGGGCG---CCGgu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 3803 | 0.66 | 0.169692 |
Target: 5'- aGCCGC-UGCAgCCAccGCCCGCGGg-- -3' miRNA: 3'- aCGGCGcGUGUgGGU--CGGGCGCCggu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 17269 | 0.66 | 0.169692 |
Target: 5'- aUGCCGCgGUGCAggCGGUcgCUGCGGCCGc -3' miRNA: 3'- -ACGGCG-CGUGUggGUCG--GGCGCCGGU- -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 15980 | 0.66 | 0.169692 |
Target: 5'- -aCCGCGCGC-CCUggGGCgcgcacaaaCGCGGCCGc -3' miRNA: 3'- acGGCGCGUGuGGG--UCGg--------GCGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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