miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
235 5' -65.9 AC_000008.1 + 19680 0.68 0.110219
Target:  5'- cGCCGCGCGuugggcggcagUGCCgGGUCgGCGGCg- -3'
miRNA:   3'- aCGGCGCGU-----------GUGGgUCGGgCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 19626 0.7 0.07908
Target:  5'- gGCC-CGCAUGgCC-GCCCGuCGGCCGg -3'
miRNA:   3'- aCGGcGCGUGUgGGuCGGGC-GCCGGU- -5'
235 5' -65.9 AC_000008.1 + 18733 0.68 0.104329
Target:  5'- gGUC-UGCACGCCCAGUCC-CGGCg- -3'
miRNA:   3'- aCGGcGCGUGUGGGUCGGGcGCCGgu -5'
235 5' -65.9 AC_000008.1 + 18607 0.67 0.133368
Target:  5'- gGCCGCaGCGacCGCCU-GCaCCGCGGCa- -3'
miRNA:   3'- aCGGCG-CGU--GUGGGuCG-GGCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 18603 0.71 0.068757
Target:  5'- aGCCGCGCgu-CCCuGCgCCGCGccGCCAg -3'
miRNA:   3'- aCGGCGCGuguGGGuCG-GGCGC--CGGU- -5'
235 5' -65.9 AC_000008.1 + 18122 0.68 0.105193
Target:  5'- cGCCGCcggugguGCGCACgacgcaugccgcccgUCAGgCCGUGGCCGg -3'
miRNA:   3'- aCGGCG-------CGUGUG---------------GGUCgGGCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 17840 0.67 0.129806
Target:  5'- cGCCGCgGCgauugGCGCCguGCCCggaauugcauccGUGGCCu -3'
miRNA:   3'- aCGGCG-CG-----UGUGGguCGGG------------CGCCGGu -5'
235 5' -65.9 AC_000008.1 + 17760 0.68 0.110219
Target:  5'- cGUCGUGCGCACCa--CCgGCGGCg- -3'
miRNA:   3'- aCGGCGCGUGUGGgucGGgCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 17520 0.69 0.098736
Target:  5'- cGCCGuCGC-CGuCgCCAGCCCGUgcuGGCCc -3'
miRNA:   3'- aCGGC-GCGuGU-G-GGUCGGGCG---CCGGu -5'
235 5' -65.9 AC_000008.1 + 17269 0.66 0.169692
Target:  5'- aUGCCGCgGUGCAggCGGUcgCUGCGGCCGc -3'
miRNA:   3'- -ACGGCG-CGUGUggGUCG--GGCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 16977 0.7 0.081315
Target:  5'- gUGgCGCGgGCAaacugcaCCAGCCCGgGGCuCAg -3'
miRNA:   3'- -ACgGCGCgUGUg------GGUCGGGCgCCG-GU- -5'
235 5' -65.9 AC_000008.1 + 16426 0.67 0.133368
Target:  5'- gUGcCCGUGCGCACCCGcccCCCGCGcaaCUAg -3'
miRNA:   3'- -AC-GGCGCGUGUGGGUc--GGGCGCc--GGU- -5'
235 5' -65.9 AC_000008.1 + 16335 0.68 0.11964
Target:  5'- gGCCGC-CGCAgC-AG-CCGCGGCCAu -3'
miRNA:   3'- aCGGCGcGUGUgGgUCgGGCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 16238 0.72 0.054887
Target:  5'- -aCCGCGCACgucGCaCCGGCCgacggGCGGCCAu -3'
miRNA:   3'- acGGCGCGUG---UG-GGUCGGg----CGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 16189 0.68 0.106942
Target:  5'- cGCCGCcgacccgGCACugCC-GCCCaacgcgcggcgGCGGCCc -3'
miRNA:   3'- aCGGCG-------CGUGugGGuCGGG-----------CGCCGGu -5'
235 5' -65.9 AC_000008.1 + 16082 0.66 0.160923
Target:  5'- cGCCGC-CACcaguguCCaCAGUggaCGCGGCCAu -3'
miRNA:   3'- aCGGCGcGUGu-----GG-GUCGg--GCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 15980 0.66 0.169692
Target:  5'- -aCCGCGCGC-CCUggGGCgcgcacaaaCGCGGCCGc -3'
miRNA:   3'- acGGCGCGUGuGGG--UCGg--------GCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 15934 0.7 0.081315
Target:  5'- gGCCaagaaGCGCuccgaccaACACCCAGUgCGCGGCgCGg -3'
miRNA:   3'- aCGG-----CGCG--------UGUGGGUCGgGCGCCG-GU- -5'
235 5' -65.9 AC_000008.1 + 13907 0.66 0.148535
Target:  5'- gGcCCGCGCcCGCCCA-CCCGUcGUCAa -3'
miRNA:   3'- aC-GGCGCGuGUGGGUcGGGCGcCGGU- -5'
235 5' -65.9 AC_000008.1 + 12905 0.72 0.056459
Target:  5'- gUGCUGCGUGCACgacgCGGCCUGUccGGCCAa -3'
miRNA:   3'- -ACGGCGCGUGUGg---GUCGGGCG--CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.