miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2350 5' -56.1 NC_001416.1 + 2931 0.68 0.494317
Target:  5'- gGCAguuGCGGUcguggaacccACCgagugaaagugugGAUGCAGCCCUGUUg -3'
miRNA:   3'- -UGU---UGCCG----------UGGa------------CUAUGUCGGGGCAG- -5'
2350 5' -56.1 NC_001416.1 + 3701 0.66 0.618252
Target:  5'- cACAAUGGCGCUc--UGCAGCUgCGUg -3'
miRNA:   3'- -UGUUGCCGUGGacuAUGUCGGgGCAg -5'
2350 5' -56.1 NC_001416.1 + 4717 0.68 0.456414
Target:  5'- gGCAgcACGGCgaugccguucaugACCUGAUaacuGCGGgCCUGUCg -3'
miRNA:   3'- -UGU--UGCCG-------------UGGACUA----UGUCgGGGCAG- -5'
2350 5' -56.1 NC_001416.1 + 5287 0.68 0.467523
Target:  5'- uCAAUGGCcuCCUGAccgcuguacacUGCAGCCUCGg- -3'
miRNA:   3'- uGUUGCCGu-GGACU-----------AUGUCGGGGCag -5'
2350 5' -56.1 NC_001416.1 + 7992 0.7 0.381132
Target:  5'- uUAACGGCAggcGGUAC-GCCCCGUCc -3'
miRNA:   3'- uGUUGCCGUggaCUAUGuCGGGGCAG- -5'
2350 5' -56.1 NC_001416.1 + 8022 0.72 0.276529
Target:  5'- aACGGCGGUGCCUGGUGCcGCCgCa-- -3'
miRNA:   3'- -UGUUGCCGUGGACUAUGuCGGgGcag -5'
2350 5' -56.1 NC_001416.1 + 12760 0.69 0.441498
Target:  5'- cGCAGCGGCcugaauggcuguaccGCCUGAcgcggaUgcgccgccaccaACAGCCCCGcCa -3'
miRNA:   3'- -UGUUGCCG---------------UGGACU------A------------UGUCGGGGCaG- -5'
2350 5' -56.1 NC_001416.1 + 14667 1.1 0.000543
Target:  5'- gACAACGGCACCUGAUACAGCCCCGUCg -3'
miRNA:   3'- -UGUUGCCGUGGACUAUGUCGGGGCAG- -5'
2350 5' -56.1 NC_001416.1 + 16278 0.7 0.3994
Target:  5'- uCGACGGCACCUGcagaAUAC-GCCCgCG-Ca -3'
miRNA:   3'- uGUUGCCGUGGAC----UAUGuCGGG-GCaG- -5'
2350 5' -56.1 NC_001416.1 + 18262 0.66 0.618252
Target:  5'- aACGACGuguuccugaaGCGCCUGA--CGGCCCCc-- -3'
miRNA:   3'- -UGUUGC----------CGUGGACUauGUCGGGGcag -5'
2350 5' -56.1 NC_001416.1 + 22488 0.68 0.509032
Target:  5'- uCAACuGCACCUGAUAUugaguGGCCUgcUGUCc -3'
miRNA:   3'- uGUUGcCGUGGACUAUG-----UCGGG--GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.