miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23500 3' -53.6 NC_005259.1 + 156 0.66 0.834837
Target:  5'- --gGGCUCGCCCGGCGg---GGUCcgGCa -3'
miRNA:   3'- cuaCUGGGCGGGCUGUacuaCUAG--CG- -5'
23500 3' -53.6 NC_005259.1 + 561 0.77 0.289276
Target:  5'- -cUGACCCGCaccaCGGCGUGggGGUCGa -3'
miRNA:   3'- cuACUGGGCGg---GCUGUACuaCUAGCg -5'
23500 3' -53.6 NC_005259.1 + 4991 0.66 0.876193
Target:  5'- cGAUGGCCgGgCacuaCGGCAaGGUGGUCGa -3'
miRNA:   3'- -CUACUGGgC-Gg---GCUGUaCUACUAGCg -5'
23500 3' -53.6 NC_005259.1 + 8795 0.66 0.868391
Target:  5'- --cGGCCCGCuuGGCGagGAUcuucUCGCg -3'
miRNA:   3'- cuaCUGGGCGggCUGUa-CUAcu--AGCG- -5'
23500 3' -53.6 NC_005259.1 + 10720 0.67 0.825902
Target:  5'- -uUGGCCCGCauGAUGUcGGUGAUCa- -3'
miRNA:   3'- cuACUGGGCGggCUGUA-CUACUAGcg -5'
23500 3' -53.6 NC_005259.1 + 13050 0.66 0.843562
Target:  5'- --cGGCCCGUUCuGCGcGAUGGUCGa -3'
miRNA:   3'- cuaCUGGGCGGGcUGUaCUACUAGCg -5'
23500 3' -53.6 NC_005259.1 + 13739 0.68 0.737683
Target:  5'- uGAUGGCCCGCgaGAUAUGccaaGAccUCGCc -3'
miRNA:   3'- -CUACUGGGCGggCUGUACua--CU--AGCG- -5'
23500 3' -53.6 NC_005259.1 + 15806 0.66 0.834837
Target:  5'- --cGA-CCGCCCGACAUccaaGGUGGU-GCu -3'
miRNA:   3'- cuaCUgGGCGGGCUGUA----CUACUAgCG- -5'
23500 3' -53.6 NC_005259.1 + 15931 0.66 0.843562
Target:  5'- cGAUGAaaCGCUCGGCGaaaugGAUGGUCa- -3'
miRNA:   3'- -CUACUggGCGGGCUGUa----CUACUAGcg -5'
23500 3' -53.6 NC_005259.1 + 16345 0.66 0.834837
Target:  5'- gGAUG-CCCGCacaaGACcgGA-GAUCGUg -3'
miRNA:   3'- -CUACuGGGCGgg--CUGuaCUaCUAGCG- -5'
23500 3' -53.6 NC_005259.1 + 17456 0.66 0.852068
Target:  5'- cGAUGugCCaccGCCCacCGUGGUGA-CGCc -3'
miRNA:   3'- -CUACugGG---CGGGcuGUACUACUaGCG- -5'
23500 3' -53.6 NC_005259.1 + 18727 0.67 0.825902
Target:  5'- --cGGgCCGCCCGGCAUcGGUaaGUCGUc -3'
miRNA:   3'- cuaCUgGGCGGGCUGUA-CUAc-UAGCG- -5'
23500 3' -53.6 NC_005259.1 + 18966 0.7 0.618052
Target:  5'- gGGUGACCucgccgcguacauCGCCCGGCAcGA-GAUCGg -3'
miRNA:   3'- -CUACUGG-------------GCGGGCUGUaCUaCUAGCg -5'
23500 3' -53.6 NC_005259.1 + 20532 0.66 0.876193
Target:  5'- gGGUG-CgCUGCCCGcaGCGUGGUGgAUCaGCa -3'
miRNA:   3'- -CUACuG-GGCGGGC--UGUACUAC-UAG-CG- -5'
23500 3' -53.6 NC_005259.1 + 28224 0.66 0.876193
Target:  5'- --cGugCCGCCaccguCGGCGgcggGGUGGUCGa -3'
miRNA:   3'- cuaCugGGCGG-----GCUGUa---CUACUAGCg -5'
23500 3' -53.6 NC_005259.1 + 28744 0.68 0.737683
Target:  5'- gGGUuACgCGCCCGAgCGUGA-GAUCGUc -3'
miRNA:   3'- -CUAcUGgGCGGGCU-GUACUaCUAGCG- -5'
23500 3' -53.6 NC_005259.1 + 29182 0.7 0.640986
Target:  5'- --cGACCCGaaCCCGugGggcgGAUGGuUCGCc -3'
miRNA:   3'- cuaCUGGGC--GGGCugUa---CUACU-AGCG- -5'
23500 3' -53.6 NC_005259.1 + 31112 0.77 0.275145
Target:  5'- cGAUGAgUCGCCCGAUGUcgccGAUGAUCGg -3'
miRNA:   3'- -CUACUgGGCGGGCUGUA----CUACUAGCg -5'
23500 3' -53.6 NC_005259.1 + 35029 0.67 0.816767
Target:  5'- --cGACUuggaaGCCCGAUAgccgGAUGAugUCGCc -3'
miRNA:   3'- cuaCUGGg----CGGGCUGUa---CUACU--AGCG- -5'
23500 3' -53.6 NC_005259.1 + 35690 0.66 0.876193
Target:  5'- --cGACgCCguGCCCGGCGaGG-GGUCGCu -3'
miRNA:   3'- cuaCUG-GG--CGGGCUGUaCUaCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.