miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23500 5' -53.5 NC_005259.1 + 21043 0.81 0.190314
Target:  5'- gGCGCGcGUucaaGGUCGCCGcCAUCGUGUGGa -3'
miRNA:   3'- -CGCGC-CA----CUAGUGGCuGUAGUACGCC- -5'
23500 5' -53.5 NC_005259.1 + 2038 0.76 0.376669
Target:  5'- aGUGCGGUGGgcggUCACCGGCAccgagacacggcgguUCAauuggGCGGg -3'
miRNA:   3'- -CGCGCCACU----AGUGGCUGU---------------AGUa----CGCC- -5'
23500 5' -53.5 NC_005259.1 + 14424 0.75 0.417007
Target:  5'- aGgGCGGUGccacagcAUgACCGACAUCAucgacgccccugUGCGGg -3'
miRNA:   3'- -CgCGCCAC-------UAgUGGCUGUAGU------------ACGCC- -5'
23500 5' -53.5 NC_005259.1 + 11747 0.74 0.465765
Target:  5'- uGCGCagacggucauaGGUGAUCACCGAC-UCGacgGCGa -3'
miRNA:   3'- -CGCG-----------CCACUAGUGGCUGuAGUa--CGCc -5'
23500 5' -53.5 NC_005259.1 + 27061 0.74 0.465765
Target:  5'- aGCGaCGGUcacggcGAcaUCGCCGACAUUcUGCGGc -3'
miRNA:   3'- -CGC-GCCA------CU--AGUGGCUGUAGuACGCC- -5'
23500 5' -53.5 NC_005259.1 + 62695 0.73 0.485681
Target:  5'- aGUGCGGUGuccCAuCCGGCgAUCAgGCGGg -3'
miRNA:   3'- -CGCGCCACua-GU-GGCUG-UAGUaCGCC- -5'
23500 5' -53.5 NC_005259.1 + 66924 0.73 0.49579
Target:  5'- cGCGCGGUGcUCgACCGGgGUgA-GCGGg -3'
miRNA:   3'- -CGCGCCACuAG-UGGCUgUAgUaCGCC- -5'
23500 5' -53.5 NC_005259.1 + 23288 0.73 0.505993
Target:  5'- gGCGCGGUGGUUggguAUCGGgGUCcgGCGcGg -3'
miRNA:   3'- -CGCGCCACUAG----UGGCUgUAGuaCGC-C- -5'
23500 5' -53.5 NC_005259.1 + 66213 0.72 0.547635
Target:  5'- gGCGCGGUcg-CGCCGACgcacacgcgGUCGUGCa- -3'
miRNA:   3'- -CGCGCCAcuaGUGGCUG---------UAGUACGcc -5'
23500 5' -53.5 NC_005259.1 + 1519 0.72 0.578489
Target:  5'- aCGCuGUcacugacGAUCACCGGCAUCAU-CGGg -3'
miRNA:   3'- cGCGcCA-------CUAGUGGCUGUAGUAcGCC- -5'
23500 5' -53.5 NC_005259.1 + 6210 0.71 0.601067
Target:  5'- aGCGgGGUGAgccgccgCGCCGACAcCGUgaccGUGGg -3'
miRNA:   3'- -CGCgCCACUa------GUGGCUGUaGUA----CGCC- -5'
23500 5' -53.5 NC_005259.1 + 10732 0.71 0.608622
Target:  5'- aUGuCGGUGAUCACCGcGCGcugccgggcgaucaUCAUGuCGGg -3'
miRNA:   3'- cGC-GCCACUAGUGGC-UGU--------------AGUAC-GCC- -5'
23500 5' -53.5 NC_005259.1 + 17473 0.71 0.633497
Target:  5'- cCGUGGUGA-CGcCCGGC--CAUGCGGg -3'
miRNA:   3'- cGCGCCACUaGU-GGCUGuaGUACGCC- -5'
23500 5' -53.5 NC_005259.1 + 6065 0.71 0.644317
Target:  5'- uGCGCGGUGAUCGCCGccgaACAggacGCc- -3'
miRNA:   3'- -CGCGCCACUAGUGGC----UGUaguaCGcc -5'
23500 5' -53.5 NC_005259.1 + 27105 0.71 0.644317
Target:  5'- aUGCGGUGG--GCUG-UGUCAUGCGGa -3'
miRNA:   3'- cGCGCCACUagUGGCuGUAGUACGCC- -5'
23500 5' -53.5 NC_005259.1 + 51266 0.71 0.644317
Target:  5'- uCGCGGUGGUCACgGugcGCggCAaGCGGc -3'
miRNA:   3'- cGCGCCACUAGUGgC---UGuaGUaCGCC- -5'
23500 5' -53.5 NC_005259.1 + 39835 0.7 0.655126
Target:  5'- aGCGCGuUGGUCGgCGACAggAUGCcGGu -3'
miRNA:   3'- -CGCGCcACUAGUgGCUGUagUACG-CC- -5'
23500 5' -53.5 NC_005259.1 + 35670 0.7 0.676672
Target:  5'- aGCGCGGUGGUggugcaCAgCGACGcCGUGCc- -3'
miRNA:   3'- -CGCGCCACUA------GUgGCUGUaGUACGcc -5'
23500 5' -53.5 NC_005259.1 + 18335 0.7 0.676672
Target:  5'- gGUGCGuucGUGGUCgacGCCGACGgcgaCAUGUGGc -3'
miRNA:   3'- -CGCGC---CACUAG---UGGCUGUa---GUACGCC- -5'
23500 5' -53.5 NC_005259.1 + 58477 0.7 0.68632
Target:  5'- uGCGUGGcuGUCGCCGACGaCAUcgaccucGCGGu -3'
miRNA:   3'- -CGCGCCacUAGUGGCUGUaGUA-------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.