miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23501 5' -58.2 NC_005259.1 + 6548 0.66 0.636398
Target:  5'- gGCGAgcGGUgAAGCUGUgcgCGgcgugucaggccGCCUCGGa -3'
miRNA:   3'- gCGCU--CCGgUUCGACAa--GC------------CGGAGCU- -5'
23501 5' -58.2 NC_005259.1 + 12054 0.66 0.625758
Target:  5'- -cCGAGGCCGAGCUcugCGGCagacacCGAg -3'
miRNA:   3'- gcGCUCCGGUUCGAcaaGCCGga----GCU- -5'
23501 5' -58.2 NC_005259.1 + 29048 0.66 0.625758
Target:  5'- aCGaCGAGaGCCGcgAGCgcgGUaUCGGCC-CGAu -3'
miRNA:   3'- -GC-GCUC-CGGU--UCGa--CA-AGCCGGaGCU- -5'
23501 5' -58.2 NC_005259.1 + 36219 0.66 0.625758
Target:  5'- gCGCGAuGCCGAGCaccUUGGCCagcgCGAg -3'
miRNA:   3'- -GCGCUcCGGUUCGacaAGCCGGa---GCU- -5'
23501 5' -58.2 NC_005259.1 + 34001 0.66 0.615123
Target:  5'- gGUGAGcuGCaaccGGCUGUaucCGGCCUCGGc -3'
miRNA:   3'- gCGCUC--CGgu--UCGACAa--GCCGGAGCU- -5'
23501 5' -58.2 NC_005259.1 + 3325 0.66 0.604502
Target:  5'- aCGUGAGcGCCGGGCagcucugcgUGcUCGGCacgaCUCGAc -3'
miRNA:   3'- -GCGCUC-CGGUUCG---------ACaAGCCG----GAGCU- -5'
23501 5' -58.2 NC_005259.1 + 62671 0.66 0.604502
Target:  5'- aGCGAGGCCAcGacc-UCGuCCUCGAg -3'
miRNA:   3'- gCGCUCCGGUuCgacaAGCcGGAGCU- -5'
23501 5' -58.2 NC_005259.1 + 51774 0.66 0.593903
Target:  5'- gGCGAGcGCCuuGAGgUaUUCGGCgCUCGGc -3'
miRNA:   3'- gCGCUC-CGG--UUCgAcAAGCCG-GAGCU- -5'
23501 5' -58.2 NC_005259.1 + 56380 0.67 0.572804
Target:  5'- uCGCG-GGCCGcgucGGCUGaUCG-UCUCGAu -3'
miRNA:   3'- -GCGCuCCGGU----UCGACaAGCcGGAGCU- -5'
23501 5' -58.2 NC_005259.1 + 52265 0.67 0.572804
Target:  5'- aGgGGGGCCGGGCagacagGacCGGCC-CGAu -3'
miRNA:   3'- gCgCUCCGGUUCGa-----CaaGCCGGaGCU- -5'
23501 5' -58.2 NC_005259.1 + 35998 0.67 0.572804
Target:  5'- gGCGAGGCCGGaCUGcaccgaggUGGCCagCGAg -3'
miRNA:   3'- gCGCUCCGGUUcGACaa------GCCGGa-GCU- -5'
23501 5' -58.2 NC_005259.1 + 42512 0.67 0.551886
Target:  5'- gGUGuGGCCAgcAGCcGUcCGGCCcCGAu -3'
miRNA:   3'- gCGCuCCGGU--UCGaCAaGCCGGaGCU- -5'
23501 5' -58.2 NC_005259.1 + 37184 0.68 0.500738
Target:  5'- gCGCGAGGaCGAGCUG--CGGcCCUUGc -3'
miRNA:   3'- -GCGCUCCgGUUCGACaaGCC-GGAGCu -5'
23501 5' -58.2 NC_005259.1 + 67916 0.68 0.48086
Target:  5'- gGCGAGGUCAAGCgcguaGGUCgCGAg -3'
miRNA:   3'- gCGCUCCGGUUCGacaagCCGGaGCU- -5'
23501 5' -58.2 NC_005259.1 + 33604 0.68 0.471066
Target:  5'- gGCGcGGUCGAGCUGcaacCGGCCacCGAa -3'
miRNA:   3'- gCGCuCCGGUUCGACaa--GCCGGa-GCU- -5'
23501 5' -58.2 NC_005259.1 + 23059 0.69 0.455609
Target:  5'- gGCGAGGgaagcgacccgacacCCAAGCUcGUUCGGCagggaccggUCGAg -3'
miRNA:   3'- gCGCUCC---------------GGUUCGA-CAAGCCGg--------AGCU- -5'
23501 5' -58.2 NC_005259.1 + 10630 0.69 0.43295
Target:  5'- gCGuCGAGGCCGaacAGCU---UGGCCUCGc -3'
miRNA:   3'- -GC-GCUCCGGU---UCGAcaaGCCGGAGCu -5'
23501 5' -58.2 NC_005259.1 + 62834 0.69 0.411863
Target:  5'- cCGCGAGGUCGAGCgcgcgGUugacgagcagccgcUCGGCg-CGAg -3'
miRNA:   3'- -GCGCUCCGGUUCGa----CA--------------AGCCGgaGCU- -5'
23501 5' -58.2 NC_005259.1 + 28135 0.7 0.405573
Target:  5'- cCGaCGuAGGCgauGAGCUGccCGGCCUCGAc -3'
miRNA:   3'- -GC-GC-UCCGg--UUCGACaaGCCGGAGCU- -5'
23501 5' -58.2 NC_005259.1 + 1786 0.7 0.396692
Target:  5'- cCGaCGAGGCCcccaAGGCUGUcaUGGCCgacgCGAg -3'
miRNA:   3'- -GC-GCUCCGG----UUCGACAa-GCCGGa---GCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.