Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23501 | 5' | -58.2 | NC_005259.1 | + | 6548 | 0.66 | 0.636398 |
Target: 5'- gGCGAgcGGUgAAGCUGUgcgCGgcgugucaggccGCCUCGGa -3' miRNA: 3'- gCGCU--CCGgUUCGACAa--GC------------CGGAGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 12054 | 0.66 | 0.625758 |
Target: 5'- -cCGAGGCCGAGCUcugCGGCagacacCGAg -3' miRNA: 3'- gcGCUCCGGUUCGAcaaGCCGga----GCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 29048 | 0.66 | 0.625758 |
Target: 5'- aCGaCGAGaGCCGcgAGCgcgGUaUCGGCC-CGAu -3' miRNA: 3'- -GC-GCUC-CGGU--UCGa--CA-AGCCGGaGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 36219 | 0.66 | 0.625758 |
Target: 5'- gCGCGAuGCCGAGCaccUUGGCCagcgCGAg -3' miRNA: 3'- -GCGCUcCGGUUCGacaAGCCGGa---GCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 34001 | 0.66 | 0.615123 |
Target: 5'- gGUGAGcuGCaaccGGCUGUaucCGGCCUCGGc -3' miRNA: 3'- gCGCUC--CGgu--UCGACAa--GCCGGAGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 3325 | 0.66 | 0.604502 |
Target: 5'- aCGUGAGcGCCGGGCagcucugcgUGcUCGGCacgaCUCGAc -3' miRNA: 3'- -GCGCUC-CGGUUCG---------ACaAGCCG----GAGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 62671 | 0.66 | 0.604502 |
Target: 5'- aGCGAGGCCAcGacc-UCGuCCUCGAg -3' miRNA: 3'- gCGCUCCGGUuCgacaAGCcGGAGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 51774 | 0.66 | 0.593903 |
Target: 5'- gGCGAGcGCCuuGAGgUaUUCGGCgCUCGGc -3' miRNA: 3'- gCGCUC-CGG--UUCgAcAAGCCG-GAGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 56380 | 0.67 | 0.572804 |
Target: 5'- uCGCG-GGCCGcgucGGCUGaUCG-UCUCGAu -3' miRNA: 3'- -GCGCuCCGGU----UCGACaAGCcGGAGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 52265 | 0.67 | 0.572804 |
Target: 5'- aGgGGGGCCGGGCagacagGacCGGCC-CGAu -3' miRNA: 3'- gCgCUCCGGUUCGa-----CaaGCCGGaGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 35998 | 0.67 | 0.572804 |
Target: 5'- gGCGAGGCCGGaCUGcaccgaggUGGCCagCGAg -3' miRNA: 3'- gCGCUCCGGUUcGACaa------GCCGGa-GCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 42512 | 0.67 | 0.551886 |
Target: 5'- gGUGuGGCCAgcAGCcGUcCGGCCcCGAu -3' miRNA: 3'- gCGCuCCGGU--UCGaCAaGCCGGaGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 37184 | 0.68 | 0.500738 |
Target: 5'- gCGCGAGGaCGAGCUG--CGGcCCUUGc -3' miRNA: 3'- -GCGCUCCgGUUCGACaaGCC-GGAGCu -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 67916 | 0.68 | 0.48086 |
Target: 5'- gGCGAGGUCAAGCgcguaGGUCgCGAg -3' miRNA: 3'- gCGCUCCGGUUCGacaagCCGGaGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 33604 | 0.68 | 0.471066 |
Target: 5'- gGCGcGGUCGAGCUGcaacCGGCCacCGAa -3' miRNA: 3'- gCGCuCCGGUUCGACaa--GCCGGa-GCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 23059 | 0.69 | 0.455609 |
Target: 5'- gGCGAGGgaagcgacccgacacCCAAGCUcGUUCGGCagggaccggUCGAg -3' miRNA: 3'- gCGCUCC---------------GGUUCGA-CAAGCCGg--------AGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 10630 | 0.69 | 0.43295 |
Target: 5'- gCGuCGAGGCCGaacAGCU---UGGCCUCGc -3' miRNA: 3'- -GC-GCUCCGGU---UCGAcaaGCCGGAGCu -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 62834 | 0.69 | 0.411863 |
Target: 5'- cCGCGAGGUCGAGCgcgcgGUugacgagcagccgcUCGGCg-CGAg -3' miRNA: 3'- -GCGCUCCGGUUCGa----CA--------------AGCCGgaGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 28135 | 0.7 | 0.405573 |
Target: 5'- cCGaCGuAGGCgauGAGCUGccCGGCCUCGAc -3' miRNA: 3'- -GC-GC-UCCGg--UUCGACaaGCCGGAGCU- -5' |
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23501 | 5' | -58.2 | NC_005259.1 | + | 1786 | 0.7 | 0.396692 |
Target: 5'- cCGaCGAGGCCcccaAGGCUGUcaUGGCCgacgCGAg -3' miRNA: 3'- -GC-GCUCCGG----UUCGACAa-GCCGGa---GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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