miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23502 3' -50.8 NC_005259.1 + 57877 0.73 0.634132
Target:  5'- cCUCGAUGugGcggugcGCGACAgaccccGCUUGAGAc -3'
miRNA:   3'- -GAGCUACugC------UGCUGUaa----CGGACUCU- -5'
23502 3' -50.8 NC_005259.1 + 18347 0.72 0.722197
Target:  5'- gUCGAcgccGACGGCGACAUguggcacaUGCCcGAGGg -3'
miRNA:   3'- gAGCUa---CUGCUGCUGUA--------ACGGaCUCU- -5'
23502 3' -50.8 NC_005259.1 + 5565 0.69 0.841423
Target:  5'- -gUGGUGACGGCGAgaCcgUGCCgugcUGGGAa -3'
miRNA:   3'- gaGCUACUGCUGCU--GuaACGG----ACUCU- -5'
23502 3' -50.8 NC_005259.1 + 55345 0.68 0.890089
Target:  5'- -gCGGUGGCGAUGcCGaacGCCUGAGc -3'
miRNA:   3'- gaGCUACUGCUGCuGUaa-CGGACUCu -5'
23502 3' -50.8 NC_005259.1 + 16676 0.68 0.904232
Target:  5'- cCUCGAUGugGuCGGCGau-CCUGGGc -3'
miRNA:   3'- -GAGCUACugCuGCUGUaacGGACUCu -5'
23502 3' -50.8 NC_005259.1 + 43241 0.67 0.923366
Target:  5'- -gCGAgcUGACGAUGccgcccGCGccgggUGCCUGAGAg -3'
miRNA:   3'- gaGCU--ACUGCUGC------UGUa----ACGGACUCU- -5'
23502 3' -50.8 NC_005259.1 + 61027 0.67 0.934713
Target:  5'- aCUCGGUGGCGGCGAgGUcGaCCgacGGGc -3'
miRNA:   3'- -GAGCUACUGCUGCUgUAaC-GGa--CUCu -5'
23502 3' -50.8 NC_005259.1 + 68691 0.66 0.939962
Target:  5'- uCUCGAUGAUcgaGGCgGGCAgcgcgucggUGCCcGAGAa -3'
miRNA:   3'- -GAGCUACUG---CUG-CUGUa--------ACGGaCUCU- -5'
23502 3' -50.8 NC_005259.1 + 31666 0.66 0.939962
Target:  5'- gCUUGAccuCGACGGgGUUGCCcGAGGc -3'
miRNA:   3'- -GAGCUacuGCUGCUgUAACGGaCUCU- -5'
23502 3' -50.8 NC_005259.1 + 7741 0.66 0.949624
Target:  5'- cCUCGAgGACG-CGGuCAccGUCUGAGAc -3'
miRNA:   3'- -GAGCUaCUGCuGCU-GUaaCGGACUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.