Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23503 | 3' | -58 | NC_005259.1 | + | 31906 | 0.67 | 0.599631 |
Target: 5'- cCGGCGCGAGcGCCucAAuCUCGUcaCGCa -3' miRNA: 3'- -GUCGCGCUCcCGGcuUUcGAGCA--GCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 32139 | 0.66 | 0.642061 |
Target: 5'- uGGCgGUGAugucGGGCUuauAGAGCUUGUCGUa -3' miRNA: 3'- gUCG-CGCU----CCCGGc--UUUCGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 32898 | 0.67 | 0.557608 |
Target: 5'- gGGgGCGAGGGugagccacCCGGcccGCUCGggCGCg -3' miRNA: 3'- gUCgCGCUCCC--------GGCUuu-CGAGCa-GCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 33903 | 0.69 | 0.44772 |
Target: 5'- -cGCGCGAcGGGCCGAGaccGGCcaCGgUGCg -3' miRNA: 3'- guCGCGCU-CCCGGCUU---UCGa-GCaGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 36056 | 0.72 | 0.327226 |
Target: 5'- -cGCGCGAGcaccaccuGCUGuguGCUCGUCGCg -3' miRNA: 3'- guCGCGCUCc-------CGGCuuuCGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 36121 | 0.66 | 0.65267 |
Target: 5'- gAGCGUaagcaguuGGGCCGccGGGCUgucCGUCGCc -3' miRNA: 3'- gUCGCGcu------CCCGGCu-UUCGA---GCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 39444 | 0.66 | 0.631444 |
Target: 5'- gAGCGUGAucGGaCCGGagaaaacuggcGAGCcgUCGUCGCg -3' miRNA: 3'- gUCGCGCU--CCcGGCU-----------UUCG--AGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 41909 | 0.69 | 0.44583 |
Target: 5'- gAGCGCGGGaGCuCGAAGGUgacccgguagaaCGUCGCu -3' miRNA: 3'- gUCGCGCUCcCG-GCUUUCGa-----------GCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 46276 | 0.67 | 0.582744 |
Target: 5'- -uGCGCGAgguucugcaacagcgGGGCCGccguGGCUgCGUUGUu -3' miRNA: 3'- guCGCGCU---------------CCCGGCuu--UCGA-GCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 48501 | 0.67 | 0.547223 |
Target: 5'- -cGCGCuuGAGGGCCGcGA-CUUGcCGCa -3' miRNA: 3'- guCGCG--CUCCCGGCuUUcGAGCaGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 50674 | 0.76 | 0.161918 |
Target: 5'- cCAGCGCGucGGuGCCGAcgAGGCgcugcucgUCGUCGCg -3' miRNA: 3'- -GUCGCGCu-CC-CGGCU--UUCG--------AGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 51437 | 0.67 | 0.557608 |
Target: 5'- gGGCGggccaCGGGGccucgcGCCGAuaGAGCUUGUUGCc -3' miRNA: 3'- gUCGC-----GCUCC------CGGCU--UUCGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 54566 | 0.67 | 0.599631 |
Target: 5'- -uGCGCGAGcuCaguGAGCUUGUCGCg -3' miRNA: 3'- guCGCGCUCccGgcuUUCGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 55550 | 0.68 | 0.487413 |
Target: 5'- uGGCGuCGAGGauGCCGAAAGCgagcaggaacaucacCGcCGCg -3' miRNA: 3'- gUCGC-GCUCC--CGGCUUUCGa--------------GCaGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 56651 | 0.67 | 0.578537 |
Target: 5'- aAGCauCGAGGGCaccgcgCGucacGGGCUCGUUGCg -3' miRNA: 3'- gUCGc-GCUCCCG------GCu---UUCGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 57028 | 0.72 | 0.312101 |
Target: 5'- uCGGCGCGguGGGGUCGca--CUCGUCGUa -3' miRNA: 3'- -GUCGCGC--UCCCGGCuuucGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 58333 | 0.67 | 0.589067 |
Target: 5'- gGGCaGCGAGaucaggucgguGGCCucGGGCaCGUCGCa -3' miRNA: 3'- gUCG-CGCUC-----------CCGGcuUUCGaGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 58583 | 0.7 | 0.423498 |
Target: 5'- gCGGCGCGGcugccGGGCCGGAucuuuucgagcgccuGGCUgaUGUCGg -3' miRNA: 3'- -GUCGCGCU-----CCCGGCUU---------------UCGA--GCAGCg -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 58687 | 0.69 | 0.457239 |
Target: 5'- cCAuCGCG-GGGUCG---GCUCGUCGCc -3' miRNA: 3'- -GUcGCGCuCCCGGCuuuCGAGCAGCG- -5' |
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23503 | 3' | -58 | NC_005259.1 | + | 60519 | 0.71 | 0.334207 |
Target: 5'- gUAGUGCGccauggccGGGCCGGGAcgcagccGCUCGUCGg -3' miRNA: 3'- -GUCGCGCu-------CCCGGCUUU-------CGAGCAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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