Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23503 | 5' | -53.5 | NC_005259.1 | + | 5672 | 0.72 | 0.542394 |
Target: 5'- -cGCGACAACAUCGcccCGCacugCCUGCu -3' miRNA: 3'- uuCGCUGUUGUAGCa--GCGcaa-GGGCG- -5' |
|||||||
23503 | 5' | -53.5 | NC_005259.1 | + | 3892 | 0.71 | 0.563859 |
Target: 5'- cAGCG-CGACAUCGUCGCcaUgCUGCc -3' miRNA: 3'- uUCGCuGUUGUAGCAGCGcaAgGGCG- -5' |
|||||||
23503 | 5' | -53.5 | NC_005259.1 | + | 1952 | 0.79 | 0.228449 |
Target: 5'- cGGCGugAGCGUUGUCGUgacGUUCCgGCg -3' miRNA: 3'- uUCGCugUUGUAGCAGCG---CAAGGgCG- -5' |
|||||||
23503 | 5' | -53.5 | NC_005259.1 | + | 938 | 0.67 | 0.807476 |
Target: 5'- -cGCGACAGCGgaaaaGUCGgGcagCUCGCg -3' miRNA: 3'- uuCGCUGUUGUag---CAGCgCaa-GGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home