Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23506 | 5' | -52.8 | NC_005259.1 | + | 51839 | 0.66 | 0.871764 |
Target: 5'- cCCGGUugaucGGCCAcucGaAAGUcacgAGCUCAGGCu -3' miRNA: 3'- aGGCCA-----CUGGUa--C-UUCG----UUGAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 52400 | 0.66 | 0.871764 |
Target: 5'- cUCGG--GCCAUcGAGGUgugggcgcucGACUCGGGCg -3' miRNA: 3'- aGGCCacUGGUA-CUUCG----------UUGAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 53540 | 0.69 | 0.729882 |
Target: 5'- cUCGGUG-CCcgGuguCGGCUCGGGCg -3' miRNA: 3'- aGGCCACuGGuaCuucGUUGAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 54008 | 0.66 | 0.879548 |
Target: 5'- gCCGGgGuCCAcc-AGCGacGCUCGGGCg -3' miRNA: 3'- aGGCCaCuGGUacuUCGU--UGAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 56501 | 0.69 | 0.719215 |
Target: 5'- -aCGGUGGCgAUGAuucc-CUCAGGCa -3' miRNA: 3'- agGCCACUGgUACUucguuGAGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 57677 | 0.66 | 0.863728 |
Target: 5'- gUCCGGccaaucGACCGUGGccaGGUuGC-CGGGCu -3' miRNA: 3'- -AGGCCa-----CUGGUACU---UCGuUGaGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 58664 | 0.67 | 0.846936 |
Target: 5'- cCCGGUGcACCggGguGCAGCUUccaucgcgGGGUc -3' miRNA: 3'- aGGCCAC-UGGuaCuuCGUUGAG--------UCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 58953 | 0.66 | 0.871764 |
Target: 5'- gUCGGccuUGGCCAgcagGucgGGCAGCUCGucGGCg -3' miRNA: 3'- aGGCC---ACUGGUa---Cu--UCGUUGAGU--CCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 59152 | 0.72 | 0.533387 |
Target: 5'- -gCGGUG-CCggGGAGCuGCUCAGGg -3' miRNA: 3'- agGCCACuGGuaCUUCGuUGAGUCCg -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 59426 | 0.67 | 0.85545 |
Target: 5'- gUCGGcGGCCAUGAagaacGGCggUUCguuacgGGGCg -3' miRNA: 3'- aGGCCaCUGGUACU-----UCGuuGAG------UCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 60507 | 0.66 | 0.869379 |
Target: 5'- gCCGGUGuugucguagugcGCCAUGGccgggccgggacgcAGCcGCUCGucGGCa -3' miRNA: 3'- aGGCCAC------------UGGUACU--------------UCGuUGAGU--CCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 60596 | 0.7 | 0.697632 |
Target: 5'- gUCgGGUG-CCGUcaucGAGCAGCaCAGGCg -3' miRNA: 3'- -AGgCCACuGGUAc---UUCGUUGaGUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 61028 | 0.67 | 0.846936 |
Target: 5'- cUCGGUGGCgGcGAGGuCGACcgaCGGGCg -3' miRNA: 3'- aGGCCACUGgUaCUUC-GUUGa--GUCCG- -5' |
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23506 | 5' | -52.8 | NC_005259.1 | + | 62698 | 0.66 | 0.879548 |
Target: 5'- -gCGGUGucCCAUccGGCGA-UCAGGCg -3' miRNA: 3'- agGCCACu-GGUAcuUCGUUgAGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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