Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23507 | 5' | -55.1 | NC_005259.1 | + | 36899 | 0.72 | 0.436891 |
Target: 5'- cGGUGaGCGCCccacugacggggauAUC-GUGCCGACGGUg -3' miRNA: 3'- aCCACgUGUGG--------------UAGuCACGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 65116 | 0.72 | 0.420734 |
Target: 5'- -aGUGCGuCACCGUCGGcgcaCCGGCGGCc -3' miRNA: 3'- acCACGU-GUGGUAGUCac--GGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 742 | 0.72 | 0.402196 |
Target: 5'- cGGUGCcuACGCCGcCGGUGCCuACcGCg -3' miRNA: 3'- aCCACG--UGUGGUaGUCACGGcUGuCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 11042 | 0.72 | 0.393124 |
Target: 5'- gGGUGguCACCG-CAugacGUGCCGAuCGGCu -3' miRNA: 3'- aCCACguGUGGUaGU----CACGGCU-GUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 57866 | 0.73 | 0.384185 |
Target: 5'- cGGUGCgACACCcucgauguggCGGUGCgCGACAGa -3' miRNA: 3'- aCCACG-UGUGGua--------GUCACG-GCUGUCg -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 17065 | 0.73 | 0.37451 |
Target: 5'- cGGUGCGCGCauuugugCGUCAGgccGCCGAUauugGGCu -3' miRNA: 3'- aCCACGUGUG-------GUAGUCa--CGGCUG----UCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 22794 | 0.74 | 0.341558 |
Target: 5'- aGGUGCuCACCGagGGUGCCGAUu-- -3' miRNA: 3'- aCCACGuGUGGUagUCACGGCUGucg -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 64588 | 0.74 | 0.333453 |
Target: 5'- cGGgccaGCACACCAacgaGGUGaCUGACGGCg -3' miRNA: 3'- aCCa---CGUGUGGUag--UCAC-GGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 18315 | 0.71 | 0.473244 |
Target: 5'- cGGUGUgcgACACCGaggcCGGUgcguucguggucgacGCCGACGGCg -3' miRNA: 3'- aCCACG---UGUGGUa---GUCA---------------CGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 52756 | 0.76 | 0.260198 |
Target: 5'- --cUGCACAacaucgagcUCGUCGGUGUCGGCAGCg -3' miRNA: 3'- accACGUGU---------GGUAGUCACGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 66008 | 0.76 | 0.253642 |
Target: 5'- gUGGUGCGCACCcUCGGgGCCGcACGuguuGCg -3' miRNA: 3'- -ACCACGUGUGGuAGUCaCGGC-UGU----CG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 27371 | 0.76 | 0.253642 |
Target: 5'- uUGGUGCccgGCACgGUgaccggcggCGGUGUCGGCAGCg -3' miRNA: 3'- -ACCACG---UGUGgUA---------GUCACGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 58393 | 0.76 | 0.240937 |
Target: 5'- cGGUGCGCACCAgcca--CCGGCGGCg -3' miRNA: 3'- aCCACGUGUGGUagucacGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 50668 | 0.77 | 0.211492 |
Target: 5'- aGG-GCACcaGCgCGUCGGUGCCGACgaGGCg -3' miRNA: 3'- aCCaCGUG--UG-GUAGUCACGGCUG--UCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 4671 | 0.78 | 0.195351 |
Target: 5'- cGGUGUcuGCACUGgcUCGG-GCCGACAGCu -3' miRNA: 3'- aCCACG--UGUGGU--AGUCaCGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 3741 | 0.78 | 0.190214 |
Target: 5'- cGGUcGCACgACCuAUCAG-GUCGACAGCg -3' miRNA: 3'- aCCA-CGUG-UGG-UAGUCaCGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 8502 | 0.78 | 0.175512 |
Target: 5'- aUGGUGUGCACCAgacgCAGcgaGCaCGACAGCc -3' miRNA: 3'- -ACCACGUGUGGUa---GUCa--CG-GCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 17333 | 0.69 | 0.5737 |
Target: 5'- gGGUGUGCcggucaacgucGCCGUCgAG-GUCGGCGGCu -3' miRNA: 3'- aCCACGUG-----------UGGUAG-UCaCGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 60258 | 0.68 | 0.64997 |
Target: 5'- gGGUGCAaggcugGCCAcCAGcgcUGCCgGGCGGCc -3' miRNA: 3'- aCCACGUg-----UGGUaGUC---ACGG-CUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 2151 | 0.68 | 0.62593 |
Target: 5'- cGGUGCugGCCAgCGGcgucgagccgccgguUGCCGAggucaugggccgcuaCGGCa -3' miRNA: 3'- aCCACGugUGGUaGUC---------------ACGGCU---------------GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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