miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23510 3' -58.5 NC_005259.1 + 41195 0.66 0.663777
Target:  5'- cGAUGGUgauGCCGuuGUCGGUGuGGaUCGu -3'
miRNA:   3'- -CUGCCA---CGGCugUAGCCGCuCC-AGCc -5'
23510 3' -58.5 NC_005259.1 + 58941 0.7 0.405938
Target:  5'- cGCGGUGgCaGCGUCGGCcuuggccagcAGGUCGGg -3'
miRNA:   3'- cUGCCACgGcUGUAGCCGc---------UCCAGCC- -5'
23510 3' -58.5 NC_005259.1 + 14076 0.7 0.405938
Target:  5'- cGGCGGUGgCCuACGUgCGcaGCGAGGUCGa -3'
miRNA:   3'- -CUGCCAC-GGcUGUA-GC--CGCUCCAGCc -5'
23510 3' -58.5 NC_005259.1 + 28641 0.7 0.414786
Target:  5'- -cCGGUGCCGACAcCGcCGAGGcCGc -3'
miRNA:   3'- cuGCCACGGCUGUaGCcGCUCCaGCc -5'
23510 3' -58.5 NC_005259.1 + 67238 0.7 0.432832
Target:  5'- cGGCGGUGuaGGgGUUGaGCGGGGccUCGGg -3'
miRNA:   3'- -CUGCCACggCUgUAGC-CGCUCC--AGCC- -5'
23510 3' -58.5 NC_005259.1 + 22988 0.69 0.442025
Target:  5'- -cCGGUGUCGACGcCGcCGAGGUCa- -3'
miRNA:   3'- cuGCCACGGCUGUaGCcGCUCCAGcc -5'
23510 3' -58.5 NC_005259.1 + 2082 0.69 0.451327
Target:  5'- gGGCGGgccUGCuCGAuuuCAUCGGCGAGGccaaUUGGc -3'
miRNA:   3'- -CUGCC---ACG-GCU---GUAGCCGCUCC----AGCC- -5'
23510 3' -58.5 NC_005259.1 + 41774 0.69 0.451327
Target:  5'- cGCGaacaacaCCGGCAUCGGCGAGcaGUCGGc -3'
miRNA:   3'- cUGCcac----GGCUGUAGCCGCUC--CAGCC- -5'
23510 3' -58.5 NC_005259.1 + 41638 0.69 0.470247
Target:  5'- uGGCGGUGCCGgucugcggGCGcUCGGUGAG--CGGg -3'
miRNA:   3'- -CUGCCACGGC--------UGU-AGCCGCUCcaGCC- -5'
23510 3' -58.5 NC_005259.1 + 28217 0.7 0.39721
Target:  5'- aGACGGUcguGCCGccacCGUCGGCGGcgggguGGUCGa -3'
miRNA:   3'- -CUGCCA---CGGCu---GUAGCCGCU------CCAGCc -5'
23510 3' -58.5 NC_005259.1 + 28941 0.7 0.388603
Target:  5'- aGGCGGcacgauccugcGCCG-CAUCGcCGAGGUCGGu -3'
miRNA:   3'- -CUGCCa----------CGGCuGUAGCcGCUCCAGCC- -5'
23510 3' -58.5 NC_005259.1 + 60599 0.7 0.387749
Target:  5'- --nGGUGCCGuCAUcgagcagcacaggCGGCGAGGUgUGGa -3'
miRNA:   3'- cugCCACGGCuGUA-------------GCCGCUCCA-GCC- -5'
23510 3' -58.5 NC_005259.1 + 8371 0.75 0.209486
Target:  5'- cGGCGGcgGCCucGGCAUCGGCGAGaGccUCGGc -3'
miRNA:   3'- -CUGCCa-CGG--CUGUAGCCGCUC-C--AGCC- -5'
23510 3' -58.5 NC_005259.1 + 27394 0.75 0.209486
Target:  5'- cGGCGGUGUCGGCAgCGGCGgcAGcUCGGu -3'
miRNA:   3'- -CUGCCACGGCUGUaGCCGC--UCcAGCC- -5'
23510 3' -58.5 NC_005259.1 + 60754 0.74 0.237345
Target:  5'- uGCaGUGCaguCGGC-UCGGCGAGGUUGGg -3'
miRNA:   3'- cUGcCACG---GCUGuAGCCGCUCCAGCC- -5'
23510 3' -58.5 NC_005259.1 + 64359 0.74 0.237345
Target:  5'- gGGCGGUGCC--CAUCaGCGAGGUCu- -3'
miRNA:   3'- -CUGCCACGGcuGUAGcCGCUCCAGcc -5'
23510 3' -58.5 NC_005259.1 + 54795 0.74 0.24933
Target:  5'- uGCGGUGCCGACcguUCGGUaGGGGaUCGu -3'
miRNA:   3'- cUGCCACGGCUGu--AGCCG-CUCC-AGCc -5'
23510 3' -58.5 NC_005259.1 + 49634 0.73 0.281478
Target:  5'- cGGCGGcaGCCG-CGUCGGCGAuGG-CGGc -3'
miRNA:   3'- -CUGCCa-CGGCuGUAGCCGCU-CCaGCC- -5'
23510 3' -58.5 NC_005259.1 + 61012 0.71 0.363528
Target:  5'- cGACGGUGagcuuccacUCGGUggCGGCGAGGUCGa -3'
miRNA:   3'- -CUGCCAC---------GGCUGuaGCCGCUCCAGCc -5'
23510 3' -58.5 NC_005259.1 + 47587 0.71 0.38012
Target:  5'- cGGCGGUguuGCCGAauaucugGUCGGCGAGGcugaGGu -3'
miRNA:   3'- -CUGCCA---CGGCUg------UAGCCGCUCCag--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.