Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23510 | 3' | -58.5 | NC_005259.1 | + | 36163 | 0.67 | 0.590748 |
Target: 5'- cACGGUGaCGACcUUGcCGAGGUCGa -3' miRNA: 3'- cUGCCACgGCUGuAGCcGCUCCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 36368 | 0.66 | 0.663777 |
Target: 5'- --aGGgauugcGUCGAag-CGGCGAGGUUGGc -3' miRNA: 3'- cugCCa-----CGGCUguaGCCGCUCCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 39416 | 0.68 | 0.519203 |
Target: 5'- aGGCGGUGCCgGACAccgucaaugagUCGaGCGuGaUCGGa -3' miRNA: 3'- -CUGCCACGG-CUGU-----------AGC-CGCuCcAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 41195 | 0.66 | 0.663777 |
Target: 5'- cGAUGGUgauGCCGuuGUCGGUGuGGaUCGu -3' miRNA: 3'- -CUGCCA---CGGCugUAGCCGCuCC-AGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 41638 | 0.69 | 0.470247 |
Target: 5'- uGGCGGUGCCGgucugcggGCGcUCGGUGAG--CGGg -3' miRNA: 3'- -CUGCCACGGC--------UGU-AGCCGCUCcaGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 41774 | 0.69 | 0.451327 |
Target: 5'- cGCGaacaacaCCGGCAUCGGCGAGcaGUCGGc -3' miRNA: 3'- cUGCcac----GGCUGUAGCCGCUC--CAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 42459 | 0.66 | 0.642914 |
Target: 5'- aACaGUcGCCGACuaCGGCGAGGccCGGc -3' miRNA: 3'- cUGcCA-CGGCUGuaGCCGCUCCa-GCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 47587 | 0.71 | 0.38012 |
Target: 5'- cGGCGGUguuGCCGAauaucugGUCGGCGAGGcugaGGu -3' miRNA: 3'- -CUGCCA---CGGCUg------UAGCCGCUCCag--CC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 49634 | 0.73 | 0.281478 |
Target: 5'- cGGCGGcaGCCG-CGUCGGCGAuGG-CGGc -3' miRNA: 3'- -CUGCCa-CGGCuGUAGCCGCU-CCaGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 49811 | 0.66 | 0.642914 |
Target: 5'- --aGGUGagcCCGACuuuacCaGCGAGGUCGGc -3' miRNA: 3'- cugCCAC---GGCUGua---GcCGCUCCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 50987 | 0.68 | 0.548507 |
Target: 5'- aGCGGUGUCGAguCAcCGGCGAaaaaccggacguuGGUCGu -3' miRNA: 3'- cUGCCACGGCU--GUaGCCGCU-------------CCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 54795 | 0.74 | 0.24933 |
Target: 5'- uGCGGUGCCGACcguUCGGUaGGGGaUCGu -3' miRNA: 3'- cUGCCACGGCUGu--AGCCG-CUCC-AGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 56179 | 0.68 | 0.528236 |
Target: 5'- cACGGUGCCGACAUaCGcguuGCGcgagcugugcucaAGGaUCGGu -3' miRNA: 3'- cUGCCACGGCUGUA-GC----CGC-------------UCC-AGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 56921 | 0.68 | 0.539353 |
Target: 5'- aGGC-GUGCCcGCGUCGGUGAgcaugcGGUUGGc -3' miRNA: 3'- -CUGcCACGGcUGUAGCCGCU------CCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 57403 | 0.66 | 0.62306 |
Target: 5'- cACGGUGCCcgcucucagucugcuGcuaccggcucgcuuACG-CGGCGAGGUUGGu -3' miRNA: 3'- cUGCCACGG---------------C--------------UGUaGCCGCUCCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 58941 | 0.7 | 0.405938 |
Target: 5'- cGCGGUGgCaGCGUCGGCcuuggccagcAGGUCGGg -3' miRNA: 3'- cUGCCACgGcUGUAGCCGc---------UCCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 60565 | 0.75 | 0.197144 |
Target: 5'- -cCGGUGCCGACGgucaggcggcccaCGGCGA-GUCGGg -3' miRNA: 3'- cuGCCACGGCUGUa------------GCCGCUcCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 60599 | 0.7 | 0.387749 |
Target: 5'- --nGGUGCCGuCAUcgagcagcacaggCGGCGAGGUgUGGa -3' miRNA: 3'- cugCCACGGCuGUA-------------GCCGCUCCA-GCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 60754 | 0.74 | 0.237345 |
Target: 5'- uGCaGUGCaguCGGC-UCGGCGAGGUUGGg -3' miRNA: 3'- cUGcCACG---GCUGuAGCCGCUCCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 61012 | 0.71 | 0.363528 |
Target: 5'- cGACGGUGagcuuccacUCGGUggCGGCGAGGUCGa -3' miRNA: 3'- -CUGCCAC---------GGCUGuaGCCGCUCCAGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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