miRNA display CGI


Results 41 - 46 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23510 3' -58.5 NC_005259.1 + 60754 0.74 0.237345
Target:  5'- uGCaGUGCaguCGGC-UCGGCGAGGUUGGg -3'
miRNA:   3'- cUGcCACG---GCUGuAGCCGCUCCAGCC- -5'
23510 3' -58.5 NC_005259.1 + 64359 0.74 0.237345
Target:  5'- gGGCGGUGCC--CAUCaGCGAGGUCu- -3'
miRNA:   3'- -CUGCCACGGcuGUAGcCGCUCCAGcc -5'
23510 3' -58.5 NC_005259.1 + 54795 0.74 0.24933
Target:  5'- uGCGGUGCCGACcguUCGGUaGGGGaUCGu -3'
miRNA:   3'- cUGCCACGGCUGu--AGCCG-CUCC-AGCc -5'
23510 3' -58.5 NC_005259.1 + 27394 0.75 0.209486
Target:  5'- cGGCGGUGUCGGCAgCGGCGgcAGcUCGGu -3'
miRNA:   3'- -CUGCCACGGCUGUaGCCGC--UCcAGCC- -5'
23510 3' -58.5 NC_005259.1 + 8371 0.75 0.209486
Target:  5'- cGGCGGcgGCCucGGCAUCGGCGAGaGccUCGGc -3'
miRNA:   3'- -CUGCCa-CGG--CUGUAGCCGCUC-C--AGCC- -5'
23510 3' -58.5 NC_005259.1 + 60565 0.75 0.197144
Target:  5'- -cCGGUGCCGACGgucaggcggcccaCGGCGA-GUCGGg -3'
miRNA:   3'- cuGCCACGGCUGUa------------GCCGCUcCAGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.