miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23511 3' -54.8 NC_005259.1 + 24053 0.74 0.395443
Target:  5'- gUCGUCGGCG-CGGUGCUcaaucucguGCACCGCg- -3'
miRNA:   3'- -GGCAGCUGUaGCCAUGG---------CGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 7424 0.74 0.369424
Target:  5'- gCCGUCGg---CGGUGcCCGCGCCGCa- -3'
miRNA:   3'- -GGCAGCuguaGCCAU-GGCGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 3173 0.75 0.344602
Target:  5'- cCCGgCGAugucaagguCGUCGGUGCgCGCACCACg- -3'
miRNA:   3'- -GGCaGCU---------GUAGCCAUG-GCGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 53624 0.75 0.336598
Target:  5'- gCGUCGAg--CGGUGCCGUugGCCGCUUc -3'
miRNA:   3'- gGCAGCUguaGCCAUGGCG--UGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 67856 0.79 0.194358
Target:  5'- -gGUCGACcaAUCGGUGCCGUAggucucgauCCACUCg -3'
miRNA:   3'- ggCAGCUG--UAGCCAUGGCGU---------GGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 27662 0.7 0.583392
Target:  5'- gUGUCGACAUCGagccauuuGUugCGCgACCACg- -3'
miRNA:   3'- gGCAGCUGUAGC--------CAugGCG-UGGUGag -5'
23511 3' -54.8 NC_005259.1 + 3128 0.7 0.583392
Target:  5'- aCCGUgGGCAgCGG-ACgGCACCGCcCg -3'
miRNA:   3'- -GGCAgCUGUaGCCaUGgCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 1430 0.68 0.711272
Target:  5'- aCGUCGuGC-UCGGgcUgGCACUGCUCg -3'
miRNA:   3'- gGCAGC-UGuAGCCauGgCGUGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 26996 0.68 0.710226
Target:  5'- aCGuUCGACGuuUCGGUcuugaacGCCGCGCCguaGCUg -3'
miRNA:   3'- gGC-AGCUGU--AGCCA-------UGGCGUGG---UGAg -5'
23511 3' -54.8 NC_005259.1 + 5905 0.68 0.700782
Target:  5'- aCGUCGAgGUCgaGGUGCugCGCACCG-UCg -3'
miRNA:   3'- gGCAGCUgUAG--CCAUG--GCGUGGUgAG- -5'
23511 3' -54.8 NC_005259.1 + 60552 0.69 0.679622
Target:  5'- cUCGUCGGCAUgccCGGUGCCGa--CGgUCa -3'
miRNA:   3'- -GGCAGCUGUA---GCCAUGGCgugGUgAG- -5'
23511 3' -54.8 NC_005259.1 + 38164 0.69 0.668973
Target:  5'- gCCGaUGACGgugaUCGGUGCCucgucGCugUACUCg -3'
miRNA:   3'- -GGCaGCUGU----AGCCAUGG-----CGugGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 20479 0.69 0.668973
Target:  5'- gCCGUCGACcUCGacACCGC-CCggcaGCUCa -3'
miRNA:   3'- -GGCAGCUGuAGCcaUGGCGuGG----UGAG- -5'
23511 3' -54.8 NC_005259.1 + 9614 0.69 0.668973
Target:  5'- aCCGU-GGCAUCGaacACCGCGCCGgugccCUCg -3'
miRNA:   3'- -GGCAgCUGUAGCca-UGGCGUGGU-----GAG- -5'
23511 3' -54.8 NC_005259.1 + 45667 0.69 0.658291
Target:  5'- gCCGUCcGCGUa-GUACCGC-CUGCUCa -3'
miRNA:   3'- -GGCAGcUGUAgcCAUGGCGuGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 41378 0.69 0.636868
Target:  5'- gCgGUCGAgCuuggcCGGUACCcauggcGCGCCGCUCg -3'
miRNA:   3'- -GgCAGCU-Gua---GCCAUGG------CGUGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 47944 0.7 0.626145
Target:  5'- gCCGaUGACggCGGUgccgauggccGCCGCGCCGCcCg -3'
miRNA:   3'- -GGCaGCUGuaGCCA----------UGGCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 59139 0.7 0.615427
Target:  5'- gUCGagcUCGGCAgCGGUGCCGgggaGCUGCUCa -3'
miRNA:   3'- -GGC---AGCUGUaGCCAUGGCg---UGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 46573 0.7 0.604724
Target:  5'- gUCG-CGGCGUCG--ACCGCGCCGCcCg -3'
miRNA:   3'- -GGCaGCUGUAGCcaUGGCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 37035 0.7 0.583392
Target:  5'- aUGUCGAUcUUGGUGCC-CGCCAC-Cg -3'
miRNA:   3'- gGCAGCUGuAGCCAUGGcGUGGUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.