miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23511 5' -61.9 NC_005259.1 + 68308 0.66 0.459299
Target:  5'- cGGGCGCGucCGGCGa--CGGGAUcUCGa -3'
miRNA:   3'- -UCCGCGCc-GCCGCcacGCCCUAuAGC- -5'
23511 5' -61.9 NC_005259.1 + 67217 0.67 0.387157
Target:  5'- cGGCGgGGUcgaugccgaccacGGCGGUGUaGGGGUugagCGg -3'
miRNA:   3'- uCCGCgCCG-------------CCGCCACG-CCCUAua--GC- -5'
23511 5' -61.9 NC_005259.1 + 64026 0.66 0.459299
Target:  5'- gAGGCGCGGCgaGGcCGGUGaCcGGAUcuuUCu -3'
miRNA:   3'- -UCCGCGCCG--CC-GCCAC-GcCCUAu--AGc -5'
23511 5' -61.9 NC_005259.1 + 57020 0.66 0.450001
Target:  5'- -aGCGCGGCucGGCGcG-GUGGGGUcgCa -3'
miRNA:   3'- ucCGCGCCG--CCGC-CaCGCCCUAuaGc -5'
23511 5' -61.9 NC_005259.1 + 54504 0.73 0.15522
Target:  5'- cGGGCaUGGCGGCGaUGUGGGGUggCGg -3'
miRNA:   3'- -UCCGcGCCGCCGCcACGCCCUAuaGC- -5'
23511 5' -61.9 NC_005259.1 + 50417 0.69 0.274685
Target:  5'- cGGUGCcuugaccggcucgGGCaGCGGUGCGGGcucgggGUCGc -3'
miRNA:   3'- uCCGCG-------------CCGcCGCCACGCCCua----UAGC- -5'
23511 5' -61.9 NC_005259.1 + 36302 0.67 0.413887
Target:  5'- -aGCGCGaGCgcuugGGCGG-GCGGGAUcauGUUGg -3'
miRNA:   3'- ucCGCGC-CG-----CCGCCaCGCCCUA---UAGC- -5'
23511 5' -61.9 NC_005259.1 + 29953 0.7 0.268841
Target:  5'- cGGuCGCGGCuGGUGGgGCGGGcgGUg- -3'
miRNA:   3'- uCC-GCGCCG-CCGCCaCGCCCuaUAgc -5'
23511 5' -61.9 NC_005259.1 + 27384 0.66 0.431723
Target:  5'- cGGUGacCGGCGGCGGUGuCGGcag--CGg -3'
miRNA:   3'- uCCGC--GCCGCCGCCAC-GCCcuauaGC- -5'
23511 5' -61.9 NC_005259.1 + 26819 0.7 0.238189
Target:  5'- cGGUacCGGCGGUGGUGCcGGGGcgGUCu -3'
miRNA:   3'- uCCGc-GCCGCCGCCACG-CCCUa-UAGc -5'
23511 5' -61.9 NC_005259.1 + 23286 0.72 0.197249
Target:  5'- cGGGCGCGGUGGUuggguaucgggguccGGcGCGGucGGUGUCGc -3'
miRNA:   3'- -UCCGCGCCGCCG---------------CCaCGCC--CUAUAGC- -5'
23511 5' -61.9 NC_005259.1 + 19211 0.68 0.363202
Target:  5'- uGGUGCgGGCGGCGacGUGGGAcaccgaGUCGg -3'
miRNA:   3'- uCCGCG-CCGCCGCcaCGCCCUa-----UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.