miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23512 3' -58.3 NC_005259.1 + 23287 0.77 0.149106
Target:  5'- gGGCGCGGUGGuUGggUAUCggGGUCCGg -3'
miRNA:   3'- -CCGCGCCACC-GCuaGUGGuaCCAGGU- -5'
23512 3' -58.3 NC_005259.1 + 58938 0.74 0.220149
Target:  5'- gGGCGCGGUGGCagcGUCGgCCuUGG-CCAg -3'
miRNA:   3'- -CCGCGCCACCGc--UAGU-GGuACCaGGU- -5'
23512 3' -58.3 NC_005259.1 + 2038 0.74 0.220707
Target:  5'- aGUGCGGUgGGCGGUCACCGgcaccgagacacggcGGUUCAa -3'
miRNA:   3'- cCGCGCCA-CCGCUAGUGGUa--------------CCAGGU- -5'
23512 3' -58.3 NC_005259.1 + 45488 0.71 0.341272
Target:  5'- uGGcCGCuGGUGGCcuuGGUCGCUGUGG-CCAc -3'
miRNA:   3'- -CC-GCG-CCACCG---CUAGUGGUACCaGGU- -5'
23512 3' -58.3 NC_005259.1 + 57029 0.7 0.391121
Target:  5'- cGGCGCGGUGG-GGUCGCacucguCGUaGGcCCAc -3'
miRNA:   3'- -CCGCGCCACCgCUAGUG------GUA-CCaGGU- -5'
23512 3' -58.3 NC_005259.1 + 35670 0.7 0.408761
Target:  5'- aGCGCGGUGGUGGUgcacagcgaCGCCGUGc-CCGg -3'
miRNA:   3'- cCGCGCCACCGCUA---------GUGGUACcaGGU- -5'
23512 3' -58.3 NC_005259.1 + 41501 0.69 0.445485
Target:  5'- --gGCGGUGGCGggCagACCGUGGaUCUg -3'
miRNA:   3'- ccgCGCCACCGCuaG--UGGUACC-AGGu -5'
23512 3' -58.3 NC_005259.1 + 27996 0.69 0.43613
Target:  5'- uGGUGCGGgugccggGGCGGggUCGCCggGGUUg- -3'
miRNA:   3'- -CCGCGCCa------CCGCU--AGUGGuaCCAGgu -5'
23512 3' -58.3 NC_005259.1 + 28241 0.69 0.417765
Target:  5'- cGGCGgGGUGGuCGAUCACgA---UCCAu -3'
miRNA:   3'- -CCGCgCCACC-GCUAGUGgUaccAGGU- -5'
23512 3' -58.3 NC_005259.1 + 1311 0.69 0.417765
Target:  5'- -aCGCGGUcGUGAgCGCCAUGGUCg- -3'
miRNA:   3'- ccGCGCCAcCGCUaGUGGUACCAGgu -5'
23512 3' -58.3 NC_005259.1 + 54083 0.68 0.493856
Target:  5'- aGGU-CGGUGGCGucgcgcAUCACCggGGUCa- -3'
miRNA:   3'- -CCGcGCCACCGC------UAGUGGuaCCAGgu -5'
23512 3' -58.3 NC_005259.1 + 36531 0.67 0.544488
Target:  5'- cGCGCGGUgugacacgcggGGUGAUCugCgguGUGGgauUCCAg -3'
miRNA:   3'- cCGCGCCA-----------CCGCUAGugG---UACC---AGGU- -5'
23512 3' -58.3 NC_005259.1 + 24058 0.67 0.553792
Target:  5'- cGGCGCGGUGcucaaucucguGCaccgcgaGAUCACCGgcagGG-CCAa -3'
miRNA:   3'- -CCGCGCCAC-----------CG-------CUAGUGGUa---CCaGGU- -5'
23512 3' -58.3 NC_005259.1 + 20064 0.67 0.554829
Target:  5'- cGCuGCGGUGGCGGucgUCACCAc-GUCgAa -3'
miRNA:   3'- cCG-CGCCACCGCU---AGUGGUacCAGgU- -5'
23512 3' -58.3 NC_005259.1 + 24300 0.67 0.586163
Target:  5'- uGGUGCuGcUGcGCGAUCuACCcgacAUGGUCCGg -3'
miRNA:   3'- -CCGCGcC-AC-CGCUAG-UGG----UACCAGGU- -5'
23512 3' -58.3 NC_005259.1 + 8952 0.66 0.596689
Target:  5'- gGGCGCGccGUGGaCGggCACCGUgccgggacguaGGUgCCAg -3'
miRNA:   3'- -CCGCGC--CACC-GCuaGUGGUA-----------CCA-GGU- -5'
23512 3' -58.3 NC_005259.1 + 23313 0.66 0.63899
Target:  5'- nGGCGCGGUcGGUG-UCGCCGag--CCGg -3'
miRNA:   3'- -CCGCGCCA-CCGCuAGUGGUaccaGGU- -5'
23512 3' -58.3 NC_005259.1 + 55340 0.66 0.63899
Target:  5'- cGGCaGCGGUGGCGAU-GCCGaacgCCu -3'
miRNA:   3'- -CCG-CGCCACCGCUAgUGGUaccaGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.