miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23513 3' -55.6 NC_005259.1 + 26810 0.66 0.76175
Target:  5'- -cCGGUUgGCcgguaccGGCGGUGGuGCcGGGGCg -3'
miRNA:   3'- caGCCAA-CGaa-----CCGCUACU-CG-UCCCG- -5'
23513 3' -55.6 NC_005259.1 + 67237 0.66 0.751553
Target:  5'- -aCGGcgGUguaGGgGuUGAGCGGGGCc -3'
miRNA:   3'- caGCCaaCGaa-CCgCuACUCGUCCCG- -5'
23513 3' -55.6 NC_005259.1 + 51658 0.66 0.751553
Target:  5'- --gGGUUGCcgcgcgGGCGcgucGGGCAcGGGCg -3'
miRNA:   3'- cagCCAACGaa----CCGCua--CUCGU-CCCG- -5'
23513 3' -55.6 NC_005259.1 + 8793 0.66 0.751553
Target:  5'- cUCGGcccGCUUGGCGAgGAucuucucgcGCcGGGCc -3'
miRNA:   3'- cAGCCaa-CGAACCGCUaCU---------CGuCCCG- -5'
23513 3' -55.6 NC_005259.1 + 54499 0.66 0.730814
Target:  5'- aUCGGcggGCaUGGCGgcGAuGUGGGGUg -3'
miRNA:   3'- cAGCCaa-CGaACCGCuaCU-CGUCCCG- -5'
23513 3' -55.6 NC_005259.1 + 51792 0.66 0.730814
Target:  5'- uUCGGc-GCUcGGCGGgucgGucagcucaGGCAGGGCg -3'
miRNA:   3'- cAGCCaaCGAaCCGCUa---C--------UCGUCCCG- -5'
23513 3' -55.6 NC_005259.1 + 27383 0.67 0.699006
Target:  5'- -aCGGUgaccgGC--GGCGGUGucGGCAGcGGCg -3'
miRNA:   3'- caGCCAa----CGaaCCGCUAC--UCGUC-CCG- -5'
23513 3' -55.6 NC_005259.1 + 68808 0.67 0.677463
Target:  5'- uGUCGGUgcccgguacaUGCUcucGGUcaaagcagucGGUGAGguGGGCc -3'
miRNA:   3'- -CAGCCA----------ACGAa--CCG----------CUACUCguCCCG- -5'
23513 3' -55.6 NC_005259.1 + 35159 0.67 0.672047
Target:  5'- cUCGGUUGCguuaagcgugaucucUGGCGugccgGUGAGCAGcaccgugccgccugaGGCg -3'
miRNA:   3'- cAGCCAACGa--------------ACCGC-----UACUCGUC---------------CCG- -5'
23513 3' -55.6 NC_005259.1 + 794 0.68 0.612148
Target:  5'- cUCGGUUGggUGGCcaagGGGCcGGGUg -3'
miRNA:   3'- cAGCCAACgaACCGcua-CUCGuCCCG- -5'
23513 3' -55.6 NC_005259.1 + 55007 0.7 0.505455
Target:  5'- cUCGGcucGCUUGGCGGUcgucucGGCAcGGGCu -3'
miRNA:   3'- cAGCCaa-CGAACCGCUAc-----UCGU-CCCG- -5'
23513 3' -55.6 NC_005259.1 + 27152 0.7 0.492112
Target:  5'- -gCGGUguuggggccaacgaUGCcgucGGCGAUGAGCAGGcuGCg -3'
miRNA:   3'- caGCCA--------------ACGaa--CCGCUACUCGUCC--CG- -5'
23513 3' -55.6 NC_005259.1 + 67451 0.7 0.484995
Target:  5'- cGUCGGggaUGCccuuuucGGCGAUG-GCGGGGa -3'
miRNA:   3'- -CAGCCa--ACGaa-----CCGCUACuCGUCCCg -5'
23513 3' -55.6 NC_005259.1 + 43949 0.72 0.389403
Target:  5'- ------aGCgucGGCGAUGGGCGGGGCc -3'
miRNA:   3'- cagccaaCGaa-CCGCUACUCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.