Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23514 | 3' | -54.3 | NC_005259.1 | + | 4460 | 0.76 | 0.292497 |
Target: 5'- gGCAGCGUaugggccaaGGCCAUCGgcggugGACCAUgGUGa -3' miRNA: 3'- -CGUCGCA---------CUGGUAGCa-----CUGGUAgCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 53026 | 0.74 | 0.397903 |
Target: 5'- gGUGGCGUcGAggCAUCGUGACC-UCGCGg -3' miRNA: 3'- -CGUCGCA-CUg-GUAGCACUGGuAGCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 6201 | 0.73 | 0.434892 |
Target: 5'- aGCAGCGUGAgCGggGUGAgCCGcCGCGc -3' miRNA: 3'- -CGUCGCACUgGUagCACU-GGUaGCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 21961 | 0.73 | 0.434892 |
Target: 5'- -aGGCGUGACCcgCGUGGgUGUCGUu -3' miRNA: 3'- cgUCGCACUGGuaGCACUgGUAGCGc -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 44682 | 0.73 | 0.4639 |
Target: 5'- gGCAGCGUGGCCcgCauaUGGCCcgCGUc -3' miRNA: 3'- -CGUCGCACUGGuaGc--ACUGGuaGCGc -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 9834 | 0.72 | 0.514364 |
Target: 5'- uGCGGCGcUGGCCcaAUCGacauUGACCAgaCGCGg -3' miRNA: 3'- -CGUCGC-ACUGG--UAGC----ACUGGUa-GCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 56901 | 0.71 | 0.577614 |
Target: 5'- cGCAGCGUGGCCGccgcagcaggCGUG-CCcgCGuCGg -3' miRNA: 3'- -CGUCGCACUGGUa---------GCACuGGuaGC-GC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 46292 | 0.7 | 0.631569 |
Target: 5'- aCAGCGgGGCCGcCGUGGCUGcguuguUCGCGg -3' miRNA: 3'- cGUCGCaCUGGUaGCACUGGU------AGCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 58465 | 0.69 | 0.685522 |
Target: 5'- cGCGGCc--ACCAgugCGUGGCUGUCGCc -3' miRNA: 3'- -CGUCGcacUGGUa--GCACUGGUAGCGc -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 67980 | 0.69 | 0.696205 |
Target: 5'- aGCGGCGUGGCCAccgcCGcGAgCGUCGa- -3' miRNA: 3'- -CGUCGCACUGGUa---GCaCUgGUAGCgc -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 4318 | 0.68 | 0.727852 |
Target: 5'- -gAGCGcGACCAaccUCGUgccgGACCucGUCGCGg -3' miRNA: 3'- cgUCGCaCUGGU---AGCA----CUGG--UAGCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 29933 | 0.68 | 0.73823 |
Target: 5'- --cGCGUGGCCGccaCGcGGCCcgGUCGCGg -3' miRNA: 3'- cguCGCACUGGUa--GCaCUGG--UAGCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 58334 | 0.67 | 0.7687 |
Target: 5'- gGCAGCGagaucaggucggUGGCC-UCG-GGCaCGUCGCa -3' miRNA: 3'- -CGUCGC------------ACUGGuAGCaCUG-GUAGCGc -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 28314 | 0.67 | 0.7687 |
Target: 5'- cGCAGCGUaGAUCggUGUG-CCGUCcuugGCGg -3' miRNA: 3'- -CGUCGCA-CUGGuaGCACuGGUAG----CGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 15566 | 0.67 | 0.778599 |
Target: 5'- uCAG-GUGGCCAcccUCGgGGCCAgCGCGa -3' miRNA: 3'- cGUCgCACUGGU---AGCaCUGGUaGCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 29454 | 0.67 | 0.796039 |
Target: 5'- cCAGCGUGACCuugccgcccggcUCGgcaugGACCGcCGUGa -3' miRNA: 3'- cGUCGCACUGGu-----------AGCa----CUGGUaGCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 3097 | 0.67 | 0.807372 |
Target: 5'- cGCAGCGaUGAgCGg-GcGGCCAUUGCGc -3' miRNA: 3'- -CGUCGC-ACUgGUagCaCUGGUAGCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 21025 | 0.67 | 0.807372 |
Target: 5'- gGCAGC-UGACCGa--UGACCGgcgCGCGu -3' miRNA: 3'- -CGUCGcACUGGUagcACUGGUa--GCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 14566 | 0.67 | 0.807372 |
Target: 5'- -gAGCGggGACCggCGaacACCAUCGCGc -3' miRNA: 3'- cgUCGCa-CUGGuaGCac-UGGUAGCGC- -5' |
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23514 | 3' | -54.3 | NC_005259.1 | + | 13447 | 0.66 | 0.816621 |
Target: 5'- -aGGCGUGACCGUCGg------CGCGg -3' miRNA: 3'- cgUCGCACUGGUAGCacugguaGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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