Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 33093 | 0.67 | 0.701306 |
Target: 5'- uGUAG-GU-AGGCcCGCGAGC-GUGCCu -3' miRNA: 3'- -CGUCaCGcUUCGuGCGCUCGuCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 11128 | 0.66 | 0.772618 |
Target: 5'- aCGGUGCGAgccgucgccugcgGGUAacacuucggUGCG-GCAGUGCUu -3' miRNA: 3'- cGUCACGCU-------------UCGU---------GCGCuCGUCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 31226 | 0.66 | 0.76362 |
Target: 5'- uCAGUcCGAugagaccauuGgGCGCG-GCGGUGCCg -3' miRNA: 3'- cGUCAcGCUu---------CgUGCGCuCGUCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 66255 | 0.66 | 0.76362 |
Target: 5'- cGCAGcGCGGccCGCGcCGGGCGGcgGCUc -3' miRNA: 3'- -CGUCaCGCUucGUGC-GCUCGUCa-CGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 43063 | 0.66 | 0.76362 |
Target: 5'- aCGGggucgGUGAGGaACGCGAGCccguUGCCg -3' miRNA: 3'- cGUCa----CGCUUCgUGCGCUCGuc--ACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 41897 | 0.66 | 0.76362 |
Target: 5'- cGCA-UGCGGgaugAGCGCGgGAGCucgaaGGUGaCCc -3' miRNA: 3'- -CGUcACGCU----UCGUGCgCUCG-----UCAC-GG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 27151 | 0.66 | 0.770628 |
Target: 5'- uGCGGUGuUGggGCcaacgaugccgucgGCGaUGAGCAG-GCUg -3' miRNA: 3'- -CGUCAC-GCuuCG--------------UGC-GCUCGUCaCGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 53562 | 0.66 | 0.722456 |
Target: 5'- gGCGGUGCGAuccgAGUAcggaacacCGUGAGguGUuCCu -3' miRNA: 3'- -CGUCACGCU----UCGU--------GCGCUCguCAcGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 1885 | 0.66 | 0.722456 |
Target: 5'- aGCAGgccGCcGAGauCGCGCGAGC--UGCCg -3' miRNA: 3'- -CGUCa--CGcUUC--GUGCGCUCGucACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 44957 | 0.67 | 0.701306 |
Target: 5'- gGCAGUGCGGucaucGGgAUGCcgaGGGCcGGUGCg -3' miRNA: 3'- -CGUCACGCU-----UCgUGCG---CUCG-UCACGg -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 47691 | 0.66 | 0.732905 |
Target: 5'- uGCA-UGCccGGUuggauGCGCG-GCAGUGCCu -3' miRNA: 3'- -CGUcACGcuUCG-----UGCGCuCGUCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 21176 | 0.67 | 0.701306 |
Target: 5'- gGCAGU-CG-GGUcaucgGCGCGAGCaccaagcugcaaGGUGCCg -3' miRNA: 3'- -CGUCAcGCuUCG-----UGCGCUCG------------UCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 60578 | 0.67 | 0.701306 |
Target: 5'- uCAG-GCGGccCACgGCGAGUcgGGUGCCg -3' miRNA: 3'- cGUCaCGCUucGUG-CGCUCG--UCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 33384 | 0.67 | 0.690627 |
Target: 5'- cCGGUccGCcGAGCGCGaCGAGCcGUGUCc -3' miRNA: 3'- cGUCA--CGcUUCGUGC-GCUCGuCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 23290 | 0.67 | 0.690627 |
Target: 5'- cGCGGUGguuggguauCGggGUccgGCGCGGuCGGUGUCg -3' miRNA: 3'- -CGUCAC---------GCuuCG---UGCGCUcGUCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 41312 | 0.67 | 0.679894 |
Target: 5'- -gAGcGCGAGGUcgaccuCGaaaaGGGCGGUGCCg -3' miRNA: 3'- cgUCaCGCUUCGu-----GCg---CUCGUCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 57886 | 0.67 | 0.673432 |
Target: 5'- gGCGGUGCGcgacagaccccgcuuGAGaCGgauguugguCGCGAcCAGUGCCa -3' miRNA: 3'- -CGUCACGC---------------UUC-GU---------GCGCUcGUCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 47173 | 0.67 | 0.669116 |
Target: 5'- cGUAGcgGCGAAGguCG---GCGGUGCCg -3' miRNA: 3'- -CGUCa-CGCUUCguGCgcuCGUCACGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 32519 | 0.67 | 0.669116 |
Target: 5'- gGUAGU-CGAGGCGgGCG-GCAG-GCUu -3' miRNA: 3'- -CGUCAcGCUUCGUgCGCuCGUCaCGG- -5' |
|||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 57298 | 0.67 | 0.658305 |
Target: 5'- cGUAGUGCacgacaucGAGCAC-CG-GCGGUGUCg -3' miRNA: 3'- -CGUCACGc-------UUCGUGcGCuCGUCACGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home