miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23519 5' -47.9 NC_005260.1 + 28004 0.66 0.999904
Target:  5'- uGGAGGUGCGGUUGcAUUGCaugaGCCGu- -3'
miRNA:   3'- uCCUUUACGCUAACuUAGUG----CGGUga -5'
23519 5' -47.9 NC_005260.1 + 114859 0.67 0.999875
Target:  5'- aAGGcAGAUGCGcuauccuGUUGCGCCACa -3'
miRNA:   3'- -UCC-UUUACGCuaacu--UAGUGCGGUGa -5'
23519 5' -47.9 NC_005260.1 + 131405 0.67 0.999668
Target:  5'- uAGGuAAGUGCGAUUGAuAUCAaCGCa--- -3'
miRNA:   3'- -UCC-UUUACGCUAACU-UAGU-GCGguga -5'
23519 5' -47.9 NC_005260.1 + 101312 0.67 0.999668
Target:  5'- cGGAAGgcaCGAUUGGAUCACGUa--- -3'
miRNA:   3'- uCCUUUac-GCUAACUUAGUGCGguga -5'
23519 5' -47.9 NC_005260.1 + 140206 0.69 0.998815
Target:  5'- --cAGAUGCGAUUGGAa-GCGUCGCUg -3'
miRNA:   3'- uccUUUACGCUAACUUagUGCGGUGA- -5'
23519 5' -47.9 NC_005260.1 + 160307 0.69 0.998271
Target:  5'- -uGGAAUGCGuUUGGAUUACGUUGCa -3'
miRNA:   3'- ucCUUUACGCuAACUUAGUGCGGUGa -5'
23519 5' -47.9 NC_005260.1 + 143881 0.71 0.993589
Target:  5'- cGGAAGaGUGAUUGGuuUCACGCCucCUg -3'
miRNA:   3'- uCCUUUaCGCUAACUu-AGUGCGGu-GA- -5'
23519 5' -47.9 NC_005260.1 + 20082 1.08 0.026909
Target:  5'- gAGGAAAUGCGAUUGAAUCACGCCACUc -3'
miRNA:   3'- -UCCUUUACGCUAACUUAGUGCGGUGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.