miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23525 5' -48.9 NC_005260.1 + 53755 0.66 0.999651
Target:  5'- -cAGAAacAGCGGAGCuuguccguuGCCcAUCAUAGu -3'
miRNA:   3'- auUCUU--UCGUCUCGuu-------CGG-UAGUGUC- -5'
23525 5' -48.9 NC_005260.1 + 29358 0.66 0.999452
Target:  5'- -uGGAAAGCAgGAGCGuuGGCUuAUCAUAu -3'
miRNA:   3'- auUCUUUCGU-CUCGU--UCGG-UAGUGUc -5'
23525 5' -48.9 NC_005260.1 + 169311 0.66 0.999319
Target:  5'- gUAGGuAAGCA-AGCAAGCgAUCAguGa -3'
miRNA:   3'- -AUUCuUUCGUcUCGUUCGgUAGUguC- -5'
23525 5' -48.9 NC_005260.1 + 79322 0.66 0.999161
Target:  5'- gGAGAAAGCGGAaCAAGCggcaaagaaCAUCAUg- -3'
miRNA:   3'- aUUCUUUCGUCUcGUUCG---------GUAGUGuc -5'
23525 5' -48.9 NC_005260.1 + 54181 0.67 0.998168
Target:  5'- -cAGAAAGCAGAuGCAGaUCGUUACAu -3'
miRNA:   3'- auUCUUUCGUCU-CGUUcGGUAGUGUc -5'
23525 5' -48.9 NC_005260.1 + 99811 0.68 0.995687
Target:  5'- -----cGGUAGAGCcAGCCAUC-CAGu -3'
miRNA:   3'- auucuuUCGUCUCGuUCGGUAGuGUC- -5'
23525 5' -48.9 NC_005260.1 + 112157 0.69 0.99319
Target:  5'- uUGAGAaguuugacaccgAAGCAGAGUgcaGAGCCgcgcugaaaGUCGCGGa -3'
miRNA:   3'- -AUUCU------------UUCGUCUCG---UUCGG---------UAGUGUC- -5'
23525 5' -48.9 NC_005260.1 + 67472 0.69 0.990962
Target:  5'- cUAAGAAAGUGGGGaCAAGCCc-CACGa -3'
miRNA:   3'- -AUUCUUUCGUCUC-GUUCGGuaGUGUc -5'
23525 5' -48.9 NC_005260.1 + 201794 0.7 0.982871
Target:  5'- cGAGAuAGGUAGAGaucaggGAGCCGUCGCGc -3'
miRNA:   3'- aUUCU-UUCGUCUCg-----UUCGGUAGUGUc -5'
23525 5' -48.9 NC_005260.1 + 162851 0.76 0.833975
Target:  5'- cAAGAucGCGGAgauaGCAGGCCAcCGCAGa -3'
miRNA:   3'- aUUCUuuCGUCU----CGUUCGGUaGUGUC- -5'
23525 5' -48.9 NC_005260.1 + 163083 1.09 0.016659
Target:  5'- aUAAGAAAGCAGAGCAAGCCAUCACAGa -3'
miRNA:   3'- -AUUCUUUCGUCUCGUUCGGUAGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.