miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23526 3' -45.5 NC_005260.1 + 182497 0.66 0.999996
Target:  5'- ---uUGUUcGCUGUaUCGCGUCAaCAAg -3'
miRNA:   3'- aauuACAAaUGACA-AGCGCAGUcGUU- -5'
23526 3' -45.5 NC_005260.1 + 65921 0.67 0.99997
Target:  5'- -aAGUGUUUGCcgaUGUUCGauuUCAGCAGc -3'
miRNA:   3'- aaUUACAAAUG---ACAAGCgc-AGUCGUU- -5'
23526 3' -45.5 NC_005260.1 + 45868 0.69 0.999726
Target:  5'- --cAUGUUUACUGUUCuGCG--AGCAAa -3'
miRNA:   3'- aauUACAAAUGACAAG-CGCagUCGUU- -5'
23526 3' -45.5 NC_005260.1 + 182792 1.04 0.065027
Target:  5'- uUUAAUGUUUACUGUUCGCGUCAGCAAu -3'
miRNA:   3'- -AAUUACAAAUGACAAGCGCAGUCGUU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.