miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23529 3' -50 NC_005260.1 + 8468 0.66 0.999352
Target:  5'- gCGGCUGGUuuUaUGAGC-GCgaUGGCCa -3'
miRNA:   3'- -GUCGACCAugGaAUUUGaCGa-ACCGG- -5'
23529 3' -50 NC_005260.1 + 65552 0.66 0.999352
Target:  5'- aAGCU-GUGCCUg----UGCUUGuGCCa -3'
miRNA:   3'- gUCGAcCAUGGAauuugACGAAC-CGG- -5'
23529 3' -50 NC_005260.1 + 76889 0.66 0.999352
Target:  5'- aCGGUaccgaacuUGGUAUCuUUGAAUUGCUUGaauucGCCa -3'
miRNA:   3'- -GUCG--------ACCAUGG-AAUUUGACGAAC-----CGG- -5'
23529 3' -50 NC_005260.1 + 27098 0.66 0.998816
Target:  5'- cCAGCUu-UACCUUGAACUGUUgcGGUa -3'
miRNA:   3'- -GUCGAccAUGGAAUUUGACGAa-CCGg -5'
23529 3' -50 NC_005260.1 + 185507 0.66 0.998569
Target:  5'- gAGCUGG-AC---GAACUGCUUGcGCg -3'
miRNA:   3'- gUCGACCaUGgaaUUUGACGAAC-CGg -5'
23529 3' -50 NC_005260.1 + 76310 0.67 0.998279
Target:  5'- uGGCUGcUGCC--AAACUGgcUGGCCa -3'
miRNA:   3'- gUCGACcAUGGaaUUUGACgaACCGG- -5'
23529 3' -50 NC_005260.1 + 202134 0.67 0.997099
Target:  5'- uCGGCUGGgaaaaACUcgAAACUGCU-GGUa -3'
miRNA:   3'- -GUCGACCa----UGGaaUUUGACGAaCCGg -5'
23529 3' -50 NC_005260.1 + 190101 0.68 0.992723
Target:  5'- -cGCguuUGGUAg--UAAACUGCUUGGCa -3'
miRNA:   3'- guCG---ACCAUggaAUUUGACGAACCGg -5'
23529 3' -50 NC_005260.1 + 1316 0.71 0.966524
Target:  5'- -uGCUGGUACCguucguaaagUUAAACaGCgUUGGUCa -3'
miRNA:   3'- guCGACCAUGG----------AAUUUGaCG-AACCGG- -5'
23529 3' -50 NC_005260.1 + 41989 0.74 0.876434
Target:  5'- uCAGCUaGUGCCUgaggUAGACaUGCUUGGUa -3'
miRNA:   3'- -GUCGAcCAUGGA----AUUUG-ACGAACCGg -5'
23529 3' -50 NC_005260.1 + 16455 1.13 0.007968
Target:  5'- uCAGCUGGUACCUUAAACUGCUUGGCCa -3'
miRNA:   3'- -GUCGACCAUGGAAUUUGACGAACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.