miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23534 5' -47.7 NC_005260.1 + 176660 0.66 0.999969
Target:  5'- -cGCCAAUGcCGAUUuCGAGAU--CUCg -3'
miRNA:   3'- gaCGGUUGC-GCUAAcGUUCUAauGAG- -5'
23534 5' -47.7 NC_005260.1 + 191284 0.66 0.999944
Target:  5'- -cGCCuuCGCuGUUGCGAGAgUUGC-Ca -3'
miRNA:   3'- gaCGGuuGCGcUAACGUUCU-AAUGaG- -5'
23534 5' -47.7 NC_005260.1 + 125624 0.66 0.999925
Target:  5'- -cGCCAAUGCGA--GCAAa--UGCUCu -3'
miRNA:   3'- gaCGGUUGCGCUaaCGUUcuaAUGAG- -5'
23534 5' -47.7 NC_005260.1 + 193534 0.66 0.999925
Target:  5'- aUGCCAACGCGGa-GCA---UUGCUUc -3'
miRNA:   3'- gACGGUUGCGCUaaCGUucuAAUGAG- -5'
23534 5' -47.7 NC_005260.1 + 205612 0.67 0.999873
Target:  5'- -cGCCAcaACGCGGUUGguGucguuuGAcgUACUCa -3'
miRNA:   3'- gaCGGU--UGCGCUAACguU------CUa-AUGAG- -5'
23534 5' -47.7 NC_005260.1 + 204822 0.67 0.99966
Target:  5'- uCUGCaCGGCGgcCGAUaucGCAAGAUUGCa- -3'
miRNA:   3'- -GACG-GUUGC--GCUAa--CGUUCUAAUGag -5'
23534 5' -47.7 NC_005260.1 + 6053 0.67 0.999644
Target:  5'- uCUGCCAACGCu-UUGCcaucuuuguuguAGAUUACg- -3'
miRNA:   3'- -GACGGUUGCGcuAACGu-----------UCUAAUGag -5'
23534 5' -47.7 NC_005260.1 + 154528 0.68 0.999572
Target:  5'- -gGCCAACuaauAUUGcCGAGAUUGCUCu -3'
miRNA:   3'- gaCGGUUGcgc-UAAC-GUUCUAAUGAG- -5'
23534 5' -47.7 NC_005260.1 + 24702 0.68 0.999184
Target:  5'- gUGCCAAUGCGGUaGCA-GAUaAUUUa -3'
miRNA:   3'- gACGGUUGCGCUAaCGUuCUAaUGAG- -5'
23534 5' -47.7 NC_005260.1 + 43270 0.69 0.998523
Target:  5'- aCUGUCGgcaGCGCGAUuucgaUGCAcAGAUUACcCa -3'
miRNA:   3'- -GACGGU---UGCGCUA-----ACGU-UCUAAUGaG- -5'
23534 5' -47.7 NC_005260.1 + 176407 0.69 0.99822
Target:  5'- -gGUCAGCGCGAUUGUccGAaagACUUc -3'
miRNA:   3'- gaCGGUUGCGCUAACGuuCUaa-UGAG- -5'
23534 5' -47.7 NC_005260.1 + 173811 0.69 0.997867
Target:  5'- -aGCCGcuuaACGCGAUUGCuaccguugcuGAGAUUAUa- -3'
miRNA:   3'- gaCGGU----UGCGCUAACG----------UUCUAAUGag -5'
23534 5' -47.7 NC_005260.1 + 4884 0.7 0.996983
Target:  5'- -aGCCAGCGCGAgcGCGAGuccaaGCa- -3'
miRNA:   3'- gaCGGUUGCGCUaaCGUUCuaa--UGag -5'
23534 5' -47.7 NC_005260.1 + 87918 0.71 0.992372
Target:  5'- aCUGCCAuuucguuuACGCGAUuugGgAAGAUaACUCc -3'
miRNA:   3'- -GACGGU--------UGCGCUAa--CgUUCUAaUGAG- -5'
23534 5' -47.7 NC_005260.1 + 67041 1.11 0.020026
Target:  5'- aCUGCCAACGCGAUUGCAAGAUUACUCc -3'
miRNA:   3'- -GACGGUUGCGCUAACGUUCUAAUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.