miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23536	3'	-51.2	NC_005260.1	+	49741	0.66	0.997961
	Target:  5'- uGAGUUaGcUUCGCagUCGCUGGCGCgACu -3' miRNA:   3'- -CUUAA-C-AAGCGcaAGUGGCCGUGgUG- -5'
23536	3'	-51.2	NC_005260.1	+	43645	0.66	0.997139
	Target:  5'- cGAGUUGUUCaaucUGUUCgcacaagaaagACUGGCACCGg -3' miRNA:   3'- -CUUAACAAGc---GCAAG-----------UGGCCGUGGUg -5'
23536	3'	-51.2	NC_005260.1	+	50306	0.66	0.995999
	Target:  5'- uGAUUGUUaCGUGUUCACCGuauacuuGCGCUuucaACa -3' miRNA:   3'- cUUAACAA-GCGCAAGUGGC-------CGUGG----UG- -5'
23536	3'	-51.2	NC_005260.1	+	89965	0.67	0.995407
	Target:  5'- uGAGUUaGcUUCGCagUCGCUGGCGCgACa -3' miRNA:   3'- -CUUAA-C-AAGCGcaAGUGGCCGUGgUG- -5'
23536	3'	-51.2	NC_005260.1	+	206187	0.69	0.980779
	Target:  5'- ---aUGUUC-CGUUCaacACCGGCuCCGCu -3' miRNA:   3'- cuuaACAAGcGCAAG---UGGCCGuGGUG- -5'
23536	3'	-51.2	NC_005260.1	+	39634	0.69	0.976146
	Target:  5'- --cUUGguaaUGCGUUCGgCGGCACCGa -3' miRNA:   3'- cuuAACaa--GCGCAAGUgGCCGUGGUg -5'
23536	3'	-51.2	NC_005260.1	+	100360	1.09	0.012364
	Target:  5'- uGAAUUGUUCGCGUUCACCGGCACCACc -3' miRNA:   3'- -CUUAACAAGCGCAAGUGGCCGUGGUG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home