Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23537 | 3' | -49.2 | NC_005260.1 | + | 3938 | 0.66 | 0.999822 |
|
Target: 5'- aCCACGcaggggauaagaGCCUugUGUUUCUUCguUGCg -3' miRNA: 3'- -GGUGU------------UGGGugACGAAGAAGacAUGa -5' |
|||||||
| 23537 | 3' | -49.2 | NC_005260.1 | + | 33007 | 0.66 | 0.99964 |
|
Target: 5'- gCCGCAccuaCCAUUGCUUCUUUccaUGUGu- -3' miRNA: 3'- -GGUGUug--GGUGACGAAGAAG---ACAUga -5' |
|||||||
| 23537 | 3' | -49.2 | NC_005260.1 | + | 214988 | 0.66 | 0.99955 |
|
Target: 5'- uCCACAAUCCACUGCgacccCU-UGCUa -3' miRNA: 3'- -GGUGUUGGGUGACGaagaaGAcAUGA- -5' |
|||||||
| 23537 | 3' | -49.2 | NC_005260.1 | + | 49542 | 0.66 | 0.99955 |
|
Target: 5'- aCCGCu-UCCGgUGCUUCUgugUGUACUc -3' miRNA: 3'- -GGUGuuGGGUgACGAAGAag-ACAUGA- -5' |
|||||||
| 23537 | 3' | -49.2 | NC_005260.1 | + | 4109 | 0.66 | 0.99955 |
|
Target: 5'- gCCGCuuuAUCUGCUGCUUCUuUCUucgcaaGUGCa -3' miRNA: 3'- -GGUGu--UGGGUGACGAAGA-AGA------CAUGa -5' |
|||||||
| 23537 | 3' | -49.2 | NC_005260.1 | + | 198129 | 0.67 | 0.999311 |
|
Target: 5'- uCCAUgagGACCCGgUGCguguUCUUC-GUGCUu -3' miRNA: 3'- -GGUG---UUGGGUgACGa---AGAAGaCAUGA- -5' |
|||||||
| 23537 | 3' | -49.2 | NC_005260.1 | + | 175762 | 0.68 | 0.997436 |
|
Target: 5'- -aACAACCCAUUGCUuagUCUUCUu---- -3' miRNA: 3'- ggUGUUGGGUGACGA---AGAAGAcauga -5' |
|||||||
| 23537 | 3' | -49.2 | NC_005260.1 | + | 208482 | 0.69 | 0.996434 |
|
Target: 5'- aCCugGGCuCCACUGCUUaacgUUUUUGUAa- -3' miRNA: 3'- -GGugUUG-GGUGACGAA----GAAGACAUga -5' |
|||||||
| 23537 | 3' | -49.2 | NC_005260.1 | + | 64049 | 0.69 | 0.994345 |
|
Target: 5'- aCCGgGACCC-UUGCUUCgagUUGUACc -3' miRNA: 3'- -GGUgUUGGGuGACGAAGaa-GACAUGa -5' |
|||||||
| 23537 | 3' | -49.2 | NC_005260.1 | + | 114812 | 1.1 | 0.01643 |
|
Target: 5'- cCCACAACCCACUGCUUCUUCUGUACUc -3' miRNA: 3'- -GGUGUUGGGUGACGAAGAAGACAUGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home