miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2354 3' -54 NC_001416.1 + 17497 1.09 0.000982
Target:  5'- gAGCAGGAAACUCACGCCCUUCACCACc -3'
miRNA:   3'- -UCGUCCUUUGAGUGCGGGAAGUGGUG- -5'
2354 3' -54 NC_001416.1 + 30936 0.76 0.211594
Target:  5'- cAGCAGGAAA---ACGCCCUUCGCaGCa -3'
miRNA:   3'- -UCGUCCUUUgagUGCGGGAAGUGgUG- -5'
2354 3' -54 NC_001416.1 + 9536 0.7 0.503182
Target:  5'- cAGCGuGGu-GCUC-UGCCCUuUCACCACc -3'
miRNA:   3'- -UCGU-CCuuUGAGuGCGGGA-AGUGGUG- -5'
2354 3' -54 NC_001416.1 + 2570 0.68 0.59149
Target:  5'- cAGCGGGAAauACUgAUGCgCagCGCCGCc -3'
miRNA:   3'- -UCGUCCUU--UGAgUGCGgGaaGUGGUG- -5'
2354 3' -54 NC_001416.1 + 6979 0.68 0.569022
Target:  5'- cGGCAGGAAGUUCuuuuugACGCCgUUUuCCACg -3'
miRNA:   3'- -UCGUCCUUUGAG------UGCGGgAAGuGGUG- -5'
2354 3' -54 NC_001416.1 + 24819 0.67 0.636783
Target:  5'- aGGCAGGAAGacaaaCACagaGCUCUUCAUCAUu -3'
miRNA:   3'- -UCGUCCUUUga---GUG---CGGGAAGUGGUG- -5'
2354 3' -54 NC_001416.1 + 20486 0.67 0.636783
Target:  5'- cAGCAGcGGAACggaGCGCCuCU--GCCGCg -3'
miRNA:   3'- -UCGUC-CUUUGag-UGCGG-GAagUGGUG- -5'
2354 3' -54 NC_001416.1 + 16697 0.66 0.735116
Target:  5'- uGUAGcGGAACggCGCGCCaucauccggcaUCACCACa -3'
miRNA:   3'- uCGUC-CUUUGa-GUGCGGga---------AGUGGUG- -5'
2354 3' -54 NC_001416.1 + 11118 0.66 0.737284
Target:  5'- aAGCGGuGAGGCUCagauuGCGUCCaUCAgCCAg -3'
miRNA:   3'- -UCGUC-CUUUGAG-----UGCGGGaAGU-GGUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.