miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2354 5' -52.7 NC_001416.1 + 20965 0.66 0.846048
Target:  5'- -aAUCGCgGCCAGUACaaaagcGGUGUUCgCa -3'
miRNA:   3'- ggUAGCG-CGGUCGUGga----CUAUAAGgG- -5'
2354 5' -52.7 NC_001416.1 + 21328 0.66 0.846048
Target:  5'- uCCAUCGgGUguGCuuCCUGAUAUg--- -3'
miRNA:   3'- -GGUAGCgCGguCGu-GGACUAUAaggg -5'
2354 5' -52.7 NC_001416.1 + 4597 0.66 0.818619
Target:  5'- gCAUC-CGCaGGCugCUGA---UCCCa -3'
miRNA:   3'- gGUAGcGCGgUCGugGACUauaAGGG- -5'
2354 5' -52.7 NC_001416.1 + 8099 0.66 0.809053
Target:  5'- gCCAUUGCGgCGGCACCaGGcaccgCCg -3'
miRNA:   3'- -GGUAGCGCgGUCGUGGaCUauaa-GGg -5'
2354 5' -52.7 NC_001416.1 + 11303 0.66 0.798307
Target:  5'- gCCAUCGcCGUCAGCcCCgacgucgggucugUGGUcagcUUCCCg -3'
miRNA:   3'- -GGUAGC-GCGGUCGuGG-------------ACUAu---AAGGG- -5'
2354 5' -52.7 NC_001416.1 + 188 0.67 0.779239
Target:  5'- gCC-UCGCuuUCAGCACCUGucGUUUCCu -3'
miRNA:   3'- -GGuAGCGc-GGUCGUGGACuaUAAGGG- -5'
2354 5' -52.7 NC_001416.1 + 9927 0.67 0.758547
Target:  5'- aCCAgaaaCGCGCCGGU-UCUGAUGgcgucUUCCa -3'
miRNA:   3'- -GGUa---GCGCGGUCGuGGACUAU-----AAGGg -5'
2354 5' -52.7 NC_001416.1 + 22341 0.67 0.747993
Target:  5'- cCCAggcUGUGCCGuucCACuuCUGAUAUUCCCc -3'
miRNA:   3'- -GGUa--GCGCGGUc--GUG--GACUAUAAGGG- -5'
2354 5' -52.7 NC_001416.1 + 7033 0.68 0.693625
Target:  5'- gCCAUaggUGCGCagaccgcGUGCCUGAgUGUUCCCc -3'
miRNA:   3'- -GGUA---GCGCGgu-----CGUGGACU-AUAAGGG- -5'
2354 5' -52.7 NC_001416.1 + 13876 0.72 0.494569
Target:  5'- cUCAaUGCGCCAGCGgCUGAUcaccUCCUg -3'
miRNA:   3'- -GGUaGCGCGGUCGUgGACUAua--AGGG- -5'
2354 5' -52.7 NC_001416.1 + 14688 0.72 0.484078
Target:  5'- aCAUCGCccggcuguGCCgcugacaacGGCACCUGAUAcagCCCc -3'
miRNA:   3'- gGUAGCG--------CGG---------UCGUGGACUAUaa-GGG- -5'
2354 5' -52.7 NC_001416.1 + 17459 1.14 0.000819
Target:  5'- cCCAUCGCGCCAGCACCUGAUAUUCCCc -3'
miRNA:   3'- -GGUAGCGCGGUCGUGGACUAUAAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.