Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2354 | 5' | -52.7 | NC_001416.1 | + | 20965 | 0.66 | 0.846048 |
Target: 5'- -aAUCGCgGCCAGUACaaaagcGGUGUUCgCa -3' miRNA: 3'- ggUAGCG-CGGUCGUGga----CUAUAAGgG- -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 21328 | 0.66 | 0.846048 |
Target: 5'- uCCAUCGgGUguGCuuCCUGAUAUg--- -3' miRNA: 3'- -GGUAGCgCGguCGu-GGACUAUAaggg -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 4597 | 0.66 | 0.818619 |
Target: 5'- gCAUC-CGCaGGCugCUGA---UCCCa -3' miRNA: 3'- gGUAGcGCGgUCGugGACUauaAGGG- -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 8099 | 0.66 | 0.809053 |
Target: 5'- gCCAUUGCGgCGGCACCaGGcaccgCCg -3' miRNA: 3'- -GGUAGCGCgGUCGUGGaCUauaa-GGg -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 11303 | 0.66 | 0.798307 |
Target: 5'- gCCAUCGcCGUCAGCcCCgacgucgggucugUGGUcagcUUCCCg -3' miRNA: 3'- -GGUAGC-GCGGUCGuGG-------------ACUAu---AAGGG- -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 188 | 0.67 | 0.779239 |
Target: 5'- gCC-UCGCuuUCAGCACCUGucGUUUCCu -3' miRNA: 3'- -GGuAGCGc-GGUCGUGGACuaUAAGGG- -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 9927 | 0.67 | 0.758547 |
Target: 5'- aCCAgaaaCGCGCCGGU-UCUGAUGgcgucUUCCa -3' miRNA: 3'- -GGUa---GCGCGGUCGuGGACUAU-----AAGGg -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 22341 | 0.67 | 0.747993 |
Target: 5'- cCCAggcUGUGCCGuucCACuuCUGAUAUUCCCc -3' miRNA: 3'- -GGUa--GCGCGGUc--GUG--GACUAUAAGGG- -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 7033 | 0.68 | 0.693625 |
Target: 5'- gCCAUaggUGCGCagaccgcGUGCCUGAgUGUUCCCc -3' miRNA: 3'- -GGUA---GCGCGgu-----CGUGGACU-AUAAGGG- -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 13876 | 0.72 | 0.494569 |
Target: 5'- cUCAaUGCGCCAGCGgCUGAUcaccUCCUg -3' miRNA: 3'- -GGUaGCGCGGUCGUgGACUAua--AGGG- -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 14688 | 0.72 | 0.484078 |
Target: 5'- aCAUCGCccggcuguGCCgcugacaacGGCACCUGAUAcagCCCc -3' miRNA: 3'- gGUAGCG--------CGG---------UCGUGGACUAUaa-GGG- -5' |
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2354 | 5' | -52.7 | NC_001416.1 | + | 17459 | 1.14 | 0.000819 |
Target: 5'- cCCAUCGCGCCAGCACCUGAUAUUCCCc -3' miRNA: 3'- -GGUAGCGCGGUCGUGGACUAUAAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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