miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23540 3' -40.9 NC_005260.1 + 122283 0.66 1
Target:  5'- -gAGACGUUUGGCCGcgcuaugcGUCGuUACa -3'
miRNA:   3'- uaUUUGUAAACUGGCua------UAGCuAUGa -5'
23540 3' -40.9 NC_005260.1 + 159099 0.66 1
Target:  5'- aGUGAACAcUUGACCGGUAgagcuagucaUCG--GCUg -3'
miRNA:   3'- -UAUUUGUaAACUGGCUAU----------AGCuaUGA- -5'
23540 3' -40.9 NC_005260.1 + 105422 0.67 1
Target:  5'- --uGACAacggUGAUCGAgugUGUCGGUACa -3'
miRNA:   3'- uauUUGUaa--ACUGGCU---AUAGCUAUGa -5'
23540 3' -40.9 NC_005260.1 + 76551 0.67 1
Target:  5'- uUGAACAa--GACCGAUggCGGUAUUc -3'
miRNA:   3'- uAUUUGUaaaCUGGCUAuaGCUAUGA- -5'
23540 3' -40.9 NC_005260.1 + 47885 0.67 1
Target:  5'- uAUAGACAUgaUGACgGuucgaugaaacGUAUCGAUGCa -3'
miRNA:   3'- -UAUUUGUAa-ACUGgC-----------UAUAGCUAUGa -5'
23540 3' -40.9 NC_005260.1 + 104015 0.68 1
Target:  5'- aGUAuAUAUUUGAUCGGUuUgGAUACa -3'
miRNA:   3'- -UAUuUGUAAACUGGCUAuAgCUAUGa -5'
23540 3' -40.9 NC_005260.1 + 167830 0.69 1
Target:  5'- -aGAGCAaggUUUcGCUGGUAUCGAUACc -3'
miRNA:   3'- uaUUUGU---AAAcUGGCUAUAGCUAUGa -5'
23540 3' -40.9 NC_005260.1 + 37590 0.66 1
Target:  5'- -aGuuCAUgcaGGCCGAUAUagcCGAUACUg -3'
miRNA:   3'- uaUuuGUAaa-CUGGCUAUA---GCUAUGA- -5'
23540 3' -40.9 NC_005260.1 + 138322 0.66 1
Target:  5'- ---uGCAaac-ACUGAUAUCGAUACUg -3'
miRNA:   3'- uauuUGUaaacUGGCUAUAGCUAUGA- -5'
23540 3' -40.9 NC_005260.1 + 211532 0.66 1
Target:  5'- -gAGAC-UUUGACCGGUAuuaUCGA-ACUc -3'
miRNA:   3'- uaUUUGuAAACUGGCUAU---AGCUaUGA- -5'
23540 3' -40.9 NC_005260.1 + 27930 0.68 1
Target:  5'- -gAAACGUUgcUGAUCuaGUGUCGAUACa -3'
miRNA:   3'- uaUUUGUAA--ACUGGc-UAUAGCUAUGa -5'
23540 3' -40.9 NC_005260.1 + 10225 0.72 0.999999
Target:  5'- -cAAGCGgauuuCCGAUAUCGGUGCg -3'
miRNA:   3'- uaUUUGUaaacuGGCUAUAGCUAUGa -5'
23540 3' -40.9 NC_005260.1 + 141290 1.09 0.139871
Target:  5'- aAUAAACAUUUGACCGAUAUCGAUACUg -3'
miRNA:   3'- -UAUUUGUAAACUGGCUAUAGCUAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.