Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23541 | 5' | -53.9 | NC_005260.1 | + | 182173 | 0.66 | 0.986604 |
Target: 5'- cGGGAUAagcccGUAGGCCAUuCGCGGGUcagguACGu -3' miRNA: 3'- cCUCUAU-----CGUCCGGUG-GCGUCUA-----UGC- -5' |
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23541 | 5' | -53.9 | NC_005260.1 | + | 224690 | 0.66 | 0.988119 |
Target: 5'- uGGAGA-AGCaaAGcGUUACaUGCAGAUGCGa -3' miRNA: 3'- -CCUCUaUCG--UC-CGGUG-GCGUCUAUGC- -5' |
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23541 | 5' | -53.9 | NC_005260.1 | + | 25469 | 0.67 | 0.976716 |
Target: 5'- cGAcGAUGGCcgcguuGGCCugCGCAauGAUACc -3' miRNA: 3'- cCU-CUAUCGu-----CCGGugGCGU--CUAUGc -5' |
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23541 | 5' | -53.9 | NC_005260.1 | + | 133591 | 0.67 | 0.971539 |
Target: 5'- --cGA-AGCAGGCCGuuGUcauAGAUACGc -3' miRNA: 3'- ccuCUaUCGUCCGGUggCG---UCUAUGC- -5' |
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23541 | 5' | -53.9 | NC_005260.1 | + | 148072 | 0.67 | 0.976716 |
Target: 5'- uGAGAUAGCGGGUCAUCuucuccgaGCAcAUACc -3' miRNA: 3'- cCUCUAUCGUCCGGUGG--------CGUcUAUGc -5' |
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23541 | 5' | -53.9 | NC_005260.1 | + | 61694 | 0.68 | 0.955086 |
Target: 5'- uGGA---AGCAGGCCAgaaCGCuGGUACa -3' miRNA: 3'- -CCUcuaUCGUCCGGUg--GCGuCUAUGc -5' |
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23541 | 5' | -53.9 | NC_005260.1 | + | 43693 | 0.71 | 0.85721 |
Target: 5'- aGAG-UAGCAGcGCCACCGC--GUACa -3' miRNA: 3'- cCUCuAUCGUC-CGGUGGCGucUAUGc -5' |
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23541 | 5' | -53.9 | NC_005260.1 | + | 185176 | 0.76 | 0.624798 |
Target: 5'- uGGucguGAUGGCuguuguaaagAGGCCACCGCAGAguggUACa -3' miRNA: 3'- -CCu---CUAUCG----------UCCGGUGGCGUCU----AUGc -5' |
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23541 | 5' | -53.9 | NC_005260.1 | + | 162859 | 1.12 | 0.004278 |
Target: 5'- cGGAGAUAGCAGGCCACCGCAGAUACGg -3' miRNA: 3'- -CCUCUAUCGUCCGGUGGCGUCUAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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