Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23542 | 3' | -38.5 | NC_005260.1 | + | 168035 | 1.08 | 0.232868 |
Target: 5'- aUUUUUGGAAAAAAUAAAAGCGGAGAGc -3' miRNA: 3'- -AAAAACCUUUUUUAUUUUCGCCUCUC- -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 34734 | 0.65 | 1 |
Target: 5'- ----cGGA--GAAUAAAAgcaaccagauguucGCGGAGAGc -3' miRNA: 3'- aaaaaCCUuuUUUAUUUU--------------CGCCUCUC- -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 196805 | 0.66 | 1 |
Target: 5'- -cUUUGGAGAAAc-----GCGGAGGc -3' miRNA: 3'- aaAAACCUUUUUuauuuuCGCCUCUc -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 226117 | 0.66 | 1 |
Target: 5'- --aUUGGAAGAAucGUAAAugacgggaagaucAGCGGGGcGGa -3' miRNA: 3'- aaaAACCUUUUU--UAUUU-------------UCGCCUC-UC- -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 53369 | 0.67 | 1 |
Target: 5'- uUUUUUGGAAAuaaAAAUccgcccGAAGGCGGAu-- -3' miRNA: 3'- -AAAAACCUUU---UUUA------UUUUCGCCUcuc -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 17378 | 0.67 | 1 |
Target: 5'- cUUUUGGAGAAuagcAGGAuGUGGGGAa -3' miRNA: 3'- aAAAACCUUUUuua-UUUU-CGCCUCUc -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 156417 | 0.67 | 1 |
Target: 5'- ----aGGAAu-AAUAAGAGCGG-GAa -3' miRNA: 3'- aaaaaCCUUuuUUAUUUUCGCCuCUc -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 35576 | 0.67 | 1 |
Target: 5'- ---gUGGA-----UAuuGGCGGGGAGa -3' miRNA: 3'- aaaaACCUuuuuuAUuuUCGCCUCUC- -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 147507 | 0.69 | 1 |
Target: 5'- -aUUUGGAGAGuuucGAUGAAuauAGCGGAcaaaGGGa -3' miRNA: 3'- aaAAACCUUUU----UUAUUU---UCGCCU----CUC- -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 38430 | 0.66 | 1 |
Target: 5'- -cUUUGGucuGGGUGAAAGCuGGGAa -3' miRNA: 3'- aaAAACCuuuUUUAUUUUCGcCUCUc -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 194336 | 0.67 | 1 |
Target: 5'- --cUUGGGAGAuuguAUAGAGGUaacacGGAGAa -3' miRNA: 3'- aaaAACCUUUUu---UAUUUUCG-----CCUCUc -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 113474 | 0.69 | 1 |
Target: 5'- ---aUGGAAGAAAUucaGAAAGCGcccGAGAu -3' miRNA: 3'- aaaaACCUUUUUUA---UUUUCGC---CUCUc -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 168325 | 0.74 | 1 |
Target: 5'- ----aGGAAu--GUcAAAGCGGAGAGu -3' miRNA: 3'- aaaaaCCUUuuuUAuUUUCGCCUCUC- -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 28391 | 0.83 | 0.995392 |
Target: 5'- ---aUGGAAGAAAguUGGAAGCGGAGGu -3' miRNA: 3'- aaaaACCUUUUUU--AUUUUCGCCUCUc -5' |
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23542 | 3' | -38.5 | NC_005260.1 | + | 62942 | 0.66 | 1 |
Target: 5'- ----cGGAGAucAUuacuAAAGUGGAGAa -3' miRNA: 3'- aaaaaCCUUUuuUAu---UUUCGCCUCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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