Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23545 | 5' | -48.3 | NC_005260.1 | + | 185269 | 1 | 0.082977 |
Target: 5'- cCAGCUCGACGUuaAACCACAACUCACg -3' miRNA: 3'- -GUCGAGCUGCAuaUUGGUGUUGAGUG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 210660 | 0.69 | 0.997156 |
Target: 5'- aAGCUUGGaacaGUGUAAUCAUGACUC-Ca -3' miRNA: 3'- gUCGAGCUg---CAUAUUGGUGUUGAGuG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 108794 | 0.69 | 0.997602 |
Target: 5'- ----aCGGCGUAUGaaACCGCAGCUCuACc -3' miRNA: 3'- gucgaGCUGCAUAU--UGGUGUUGAG-UG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 73473 | 0.69 | 0.997988 |
Target: 5'- aCAGCUCGAUGUuguACCAUAGacagaaaCACg -3' miRNA: 3'- -GUCGAGCUGCAuauUGGUGUUga-----GUG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 86723 | 0.68 | 0.998825 |
Target: 5'- cCAGCUUGACGUccAUAACCGgaguuacCAACgUACu -3' miRNA: 3'- -GUCGAGCUGCA--UAUUGGU-------GUUGaGUG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 148045 | 0.67 | 0.999494 |
Target: 5'- gGGCUCuuuuUGUAUGuggaaCACGACUCGCa -3' miRNA: 3'- gUCGAGcu--GCAUAUug---GUGUUGAGUG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 60872 | 0.67 | 0.999594 |
Target: 5'- uCAGCUUGACGgcgaaGUAaucGCCAgCGAUUCAg -3' miRNA: 3'- -GUCGAGCUGCa----UAU---UGGU-GUUGAGUg -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 78651 | 0.67 | 0.999677 |
Target: 5'- aAGUUUGGCGUAcUAACuCGCgAACUUGCg -3' miRNA: 3'- gUCGAGCUGCAU-AUUG-GUG-UUGAGUG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 63021 | 0.67 | 0.999744 |
Target: 5'- aCGuaUCGACGUAUGuuuCCGCGAaaUCGCa -3' miRNA: 3'- -GUcgAGCUGCAUAUu--GGUGUUg-AGUG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 82291 | 0.66 | 0.999878 |
Target: 5'- uGGCUCGgacuauacaaucGCGUAUAGCCGCuauaUgACg -3' miRNA: 3'- gUCGAGC------------UGCAUAUUGGUGuug-AgUG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 55230 | 0.66 | 0.999906 |
Target: 5'- -uGCUCGugGUAUcuauaaCGCAACUagCGCa -3' miRNA: 3'- guCGAGCugCAUAuug---GUGUUGA--GUG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 130486 | 0.66 | 0.999928 |
Target: 5'- uCAGCUCGGCuUAUAucgaGCUucauGCAACUC-Cg -3' miRNA: 3'- -GUCGAGCUGcAUAU----UGG----UGUUGAGuG- -5' |
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23545 | 5' | -48.3 | NC_005260.1 | + | 93363 | 0.66 | 0.999946 |
Target: 5'- -cGCUUGAUGUAUGAgCGCAGuuuCUC-Ca -3' miRNA: 3'- guCGAGCUGCAUAUUgGUGUU---GAGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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