Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23548 | 5' | -50.1 | NC_005260.1 | + | 190890 | 0.69 | 0.994265 |
Target: 5'- -cGAUUUguacCGGGUCAcaaguaacggcgaUUGCUAACuCCGAa -3' miRNA: 3'- gcCUAAA----GCCCAGU-------------AACGAUUG-GGCU- -5' |
|||||||
23548 | 5' | -50.1 | NC_005260.1 | + | 46508 | 0.72 | 0.959819 |
Target: 5'- uCGGAaacagUCGGGUCAUUGaUGAUUCGGg -3' miRNA: 3'- -GCCUaa---AGCCCAGUAACgAUUGGGCU- -5' |
|||||||
23548 | 5' | -50.1 | NC_005260.1 | + | 200887 | 1.1 | 0.014303 |
Target: 5'- cCGGAUUUCGGGUCAUUGCUAACCCGAg -3' miRNA: 3'- -GCCUAAAGCCCAGUAACGAUUGGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home