miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2355 3' -57.5 NC_001416.1 + 30530 0.66 0.537884
Target:  5'- uUGuuGugaGUGUGGCGAUCCGauagauGAACGAa -3'
miRNA:   3'- gACggC---CACGCCGUUAGGC------CUUGCUa -5'
2355 3' -57.5 NC_001416.1 + 42920 0.66 0.534681
Target:  5'- cCUGCCcGaUGCGGCuAAUCaguucgacgcgauaCGGAACGAg -3'
miRNA:   3'- -GACGGcC-ACGCCG-UUAG--------------GCCUUGCUa -5'
2355 3' -57.5 NC_001416.1 + 8968 0.66 0.527233
Target:  5'- aUGCCGGUGaaa-GGUCCGGGACc-- -3'
miRNA:   3'- gACGGCCACgccgUUAGGCCUUGcua -5'
2355 3' -57.5 NC_001416.1 + 12660 0.67 0.495782
Target:  5'- gCUGuuGGUgGCGGCGcAUCCGcGucagGCGGUa -3'
miRNA:   3'- -GACggCCA-CGCCGU-UAGGC-Cu---UGCUA- -5'
2355 3' -57.5 NC_001416.1 + 4665 0.7 0.313445
Target:  5'- gCUGCCGGUGUccGGCAcgcuggucagCCGGAcGCGGg -3'
miRNA:   3'- -GACGGCCACG--CCGUua--------GGCCU-UGCUa -5'
2355 3' -57.5 NC_001416.1 + 20437 0.7 0.298261
Target:  5'- uCUGCCaGG-GCGGCAaaaacGUCCGaGACGAa -3'
miRNA:   3'- -GACGG-CCaCGCCGU-----UAGGCcUUGCUa -5'
2355 3' -57.5 NC_001416.1 + 20228 0.71 0.283653
Target:  5'- gUGCCGGUGCGGCGaaaacGUCaGaAACGAa -3'
miRNA:   3'- gACGGCCACGCCGU-----UAGgCcUUGCUa -5'
2355 3' -57.5 NC_001416.1 + 12906 0.73 0.219031
Target:  5'- -aGCCGGUcGCaGGC-GUCCGGGACGu- -3'
miRNA:   3'- gaCGGCCA-CG-CCGuUAGGCCUUGCua -5'
2355 3' -57.5 NC_001416.1 + 589 0.75 0.158487
Target:  5'- cCUGUCGGUgcaGCGGCGuuuUCCGGAACu-- -3'
miRNA:   3'- -GACGGCCA---CGCCGUu--AGGCCUUGcua -5'
2355 3' -57.5 NC_001416.1 + 7540 0.77 0.110311
Target:  5'- uCUGCCGGUGUGGCAG-CCGaAAUGAc -3'
miRNA:   3'- -GACGGCCACGCCGUUaGGCcUUGCUa -5'
2355 3' -57.5 NC_001416.1 + 17681 1.06 0.000784
Target:  5'- gCUGCCGGUGCGGCAAUCCGGAACGAUa -3'
miRNA:   3'- -GACGGCCACGCCGUUAGGCCUUGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.