Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23550 | 3' | -51.3 | NC_005260.1 | + | 181772 | 0.66 | 0.997685 |
Target: 5'- uGCCGCGAACaacagAGCUaUCCaguucuuuagcgaaACGCaGACc -3' miRNA: 3'- gUGGCGCUUG-----UCGAaAGG--------------UGCGaUUG- -5' |
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23550 | 3' | -51.3 | NC_005260.1 | + | 191367 | 0.66 | 0.995779 |
Target: 5'- aCACCGCGAuugauucgguggGCaucucgauAGUUUUCCAUGCa--- -3' miRNA: 3'- -GUGGCGCU------------UG--------UCGAAAGGUGCGauug -5' |
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23550 | 3' | -51.3 | NC_005260.1 | + | 179954 | 0.67 | 0.992442 |
Target: 5'- gCACCGCGAaacuuaGCAGCggUaCCACucaUAGCa -3' miRNA: 3'- -GUGGCGCU------UGUCGaaA-GGUGcg-AUUG- -5' |
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23550 | 3' | -51.3 | NC_005260.1 | + | 69980 | 0.67 | 0.991344 |
Target: 5'- uCACC-CGGcaagACAGUUcgUUCCACGCUGu- -3' miRNA: 3'- -GUGGcGCU----UGUCGA--AAGGUGCGAUug -5' |
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23550 | 3' | -51.3 | NC_005260.1 | + | 181941 | 0.68 | 0.987281 |
Target: 5'- -uUCGUGAcCGGCaUUCCAUGCuUGACg -3' miRNA: 3'- guGGCGCUuGUCGaAAGGUGCG-AUUG- -5' |
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23550 | 3' | -51.3 | NC_005260.1 | + | 15743 | 0.68 | 0.987281 |
Target: 5'- aCACCGCGAuaucguuacgACGGUcgauaucUUCUugGCUGAUu -3' miRNA: 3'- -GUGGCGCU----------UGUCGa------AAGGugCGAUUG- -5' |
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23550 | 3' | -51.3 | NC_005260.1 | + | 51166 | 0.69 | 0.977435 |
Target: 5'- gACCaCGAacauacuuaguaGCAGCUUUCCAacCGUUGGCu -3' miRNA: 3'- gUGGcGCU------------UGUCGAAAGGU--GCGAUUG- -5' |
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23550 | 3' | -51.3 | NC_005260.1 | + | 204523 | 0.69 | 0.969321 |
Target: 5'- uGCCGCGAAuCAGCUUguugaaacugUUCGUGCUGAUu -3' miRNA: 3'- gUGGCGCUU-GUCGAA----------AGGUGCGAUUG- -5' |
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23550 | 3' | -51.3 | NC_005260.1 | + | 58082 | 0.82 | 0.455441 |
Target: 5'- -uUCGCGAACAGC-UUCCACGCUuuCg -3' miRNA: 3'- guGGCGCUUGUCGaAAGGUGCGAuuG- -5' |
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23550 | 3' | -51.3 | NC_005260.1 | + | 203939 | 1.1 | 0.009364 |
Target: 5'- uCACCGCGAACAGCUUUCCACGCUAACg -3' miRNA: 3'- -GUGGCGCUUGUCGAAAGGUGCGAUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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